Large-scale extraction of gene interactions from full-text literature using DeepDive. - Emily K. Mallory; Ce Zhang 001; Christopher Ré; Russ B. Altman (Bioinform., 2016)

Chemical reaction vector embeddings: towards predicting drug metabolism in the human gut microbiome. - Emily K. Mallory; Ambika Acharya; Stefano E. Rensi; Peter J Turnbaugh; Roselie A. Bright; Russ B. Altman (PSB, 2018)

GeneDive: A gene interaction search and visualization tool to facilitate precision medicine. - Paul Previde; Brook Thomas; Mike Wong 001; Emily K. Mallory; Dragutin Petkovic; Russ B. Altman; Anagha Kulkarni 001 (PSB, 2018)

Extracting chemical reactions from text using Snorkel. - Emily K. Mallory; Matthieu de Rochemonteix; Alexander Ratner; Ambika Acharya; Christopher Ré; Roselie A. Bright; Russ B. Altman (BMC Bioinform., 2020)

Search and visualization of gene-drug-disease interactions for pharmacogenomics and precision medicine research using GeneDive. - Mike Wong 001; Paul Previde; Jack Cole; Brook Thomas; Nayana Laxmeshwar; Emily K. Mallory; Jake Lever; Dragutin Petkovic; Russ B. Altman; Anagha Kulkarni 001 (J. Biomed. Informatics, 2021)