Initialization parameter sweep in ATHENA: optimizing neural networks for detecting gene-gene interactions in the presence of small main effects. - Emily Rose Holzinger; Carrie C. Buchanan; Scott M. Dudek; Eric Torstenson; Stephen D. Turner; Marylyn D. Ritchie (GECCO, 2010)

ATHENA Optimization: The Effect of Initial Parameter Settings across Different Genetic Models. - Emily Rose Holzinger; Scott M. Dudek; Eric Torstenson; Marylyn D. Ritchie (EvoBio, 2011)

Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets. - Emily Rose Holzinger; Scott M. Dudek; Alex T. Frase; Brooke L. Fridley; Prabhakar Chalise; Marylyn D. Ritchie (EvoBIO, 2012)

Evaluation of Parameter Contribution to Neural Network Size and Fitness in ATHENA for Genetic Analysis. - Ruowang Li; Emily Rose Holzinger; Scott M. Dudek; Marylyn D. Ritchie (GPTP, 2013)

ATHENA: A Tool for Meta-Dimensional Analysis Applied to Genotypes and Gene Expression Data to Predict HDL Cholesterol Levels. - Emily Rose Holzinger; Scott M. Dudek; Alex T. Frase; Ronald M. Krauss; Marisa Wong Medina; Marylyn D. Ritchie (Pacific Symposium on Biocomputing, 2013)

Next-Generation Analysis of Cataracts: Determining Knowledge Driven Gene-Gene Interactions Using Biofilter, and Gene-Environment Interactions Using the PhenX Toolkit. - Sarah A. Pendergrass; Shefali S. Verma; Emily Rose Holzinger; Carrie Moore; John R. Wallace; Scott M. Dudek; Wayne Huggins; Terrie E. Kitchner; Carol Waudby; Richard L. Berg; Catherine A. McCarty; Marylyn D. Ritchie (Pacific Symposium on Biocomputing, 2013)

ATHENA: the analysis tool for heritable and environmental network associations. - Emily Rose Holzinger; Scott M. Dudek; Alex T. Frase; Sarah A. Pendergrass; Marylyn D. Ritchie (Bioinform., 2014)

Variable Selection Method for the Identification of Epistatic Models. - Emily Rose Holzinger; Silke Szymczak; Abhijit Dasgupta 003; James D. Malley; Qing Li; Joan E. Bailey-Wilson (Pacific Symposium on Biocomputing, 2015)

Identifying gene-gene interactions that are highly associated with Body Mass Index using Quantitative Multifactor Dimensionality Reduction (QMDR). - Rishika De; Shefali S. Verma; Fotios Drenos; Emily Rose Holzinger; Michael Holmes; Molly A. Hall; David R. Crosslin; David Carrell; Hakon Hakonarson; Gail P. Jarvik; Eric B. Larson; Jennifer A. Pacheco; et al. (BioData Min., 2015)

r2VIM: A new variable selection method for random forests in genome-wide association studies. - Silke Szymczak; Emily Rose Holzinger; Abhijit Dasgupta 003; James D. Malley; Anne M. Molloy; James L. Mills; Lawrence C. Brody; Dwight Stambolian; Joan E. Bailey-Wilson (BioData Min., 2016)

Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals. - Emily Rose Holzinger; Shefali S. Verma; Carrie Colleen Buchanan Moore; Molly A. Hall; Rishika De; Diane Gilbert-Diamond; Matthew B. Lanktree; Nathan Pankratz; Antoinette Amuzu; Amber Burt; Caroline Dale; Scott M. Dudek; et al. (BioData Min., 2017)