Trisomic Phase Inference. - Andrew G. Clark; Emmanouil T. Dermitzakis; Stylianos E. Antonarakis (Computational Methods for SNPs and Haplotype Inference, 2002)

Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies. - Tsun-Po Yang; Claude Beazley; Stephen B. Montgomery; Antigone S. Dimas; Maria Gutierrez-Arcelus; Barbara E. Stranger; Panos Deloukas; Emmanouil T. Dermitzakis (Bioinform., 2010)

Data analysis issues for allele-specific expression using Illumina's GoldenGate assay. - Matthew E. Ritchie; Matthew S. Forrest; Antigone S. Dimas; Caroline Daelemans; Emmanouil T. Dermitzakis; Panagiotis Deloukas; Simon Tavaré (BMC Bioinform., 2010)

Analysis of case-control association studies with known risk variants. - Noah Zaitlen; Bogdan Pasaniuc; Nick Patterson; Samuela Pollack; Benjamin Voight; Leif Groop; David Altshuler; Brian E. Henderson; Laurence N. Kolonel; Loic Le Marchand; Kevin Waters; Christopher A. Haiman; et al. (Bioinform., 2012)

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data. - Sebastian M. Waszak; Helena Kilpinen; Andreas R. Gschwind; Andrea Orioli; Sunil K. Raghav; Robert M. Witwicki; Eugenia Migliavacca; Alisa Yurovsky; Tuuli Lappalainen; Nouria Hernandez; Alexandre Reymond; Emmanouil T. Dermitzakis; et al. (Bioinform., 2014)

Assessing allele-specific expression across multiple tissues from RNA-seq read data. - Matti Pirinen; Tuuli Lappalainen; Noah A. Zaitlen; Emmanouil T. Dermitzakis; Peter Donnelly; Mark I. McCarthy; Manuel A. Rivas (Bioinform., 2015)

Fast and efficient QTL mapper for thousands of molecular phenotypes. - Halit Ongen; Alfonso Buil; Andrew Anand Brown; Emmanouil T. Dermitzakis; Olivier Delaneau (Bioinform., 2016)

MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets. - Alexandre Fort; Nikolaos I. Panousis; Marco Garieri; Stylianos E. Antonarakis; Tuuli Lappalainen; Emmanouil T. Dermitzakis; Olivier Delaneau (Bioinform., 2017)

The impact of rare variation on gene expression across tissues. - Xin Li 130; Yungil Kim; Emily K. Tsang; Joe R. Davis; Farhan N. Damani; Colby Chiang; Gaelen T. Hess; Zachary Zappala; Benjamin J. Strober; Alexandra J. Scott; Amy Li; Andrea Ganna; et al. (Nat., 2017)