Processing pipeline for digitalizing the lineage tree of early zebrafish embryogenesis from multiharmonic imaging. - Miguel A. Luengo-Oroz; Thierry Savy; Jose L. Rubio-Guivernau; Louise Duloquin; Emmanuel Faure; Nicolas Olivier; María J. Ledesma-Carbayo; Delphine Debarre; Paul Bourgine; Emmanuel Beaurepaire; Nadine Peyriéras; Andrés Santos (ISBI, 2011)

Methodology for Reconstructing Early Zebrafish Development From In Vivo Multiphoton Microscopy. - Miguel A. Luengo-Oroz; Jose L. Rubio-Guivernau; Emmanuel Faure; Thierry Savy; Louise Duloquin; Nicolas Olivier; David Pastor-Escuredo; María J. Ledesma-Carbayo; Delphine Debarre; Paul Bourgine; Emmanuel Beaurepaire; Nadine Peyriéras; et al. (IEEE Trans. Image Process., 2012)

Neural Cell Segmentation in Large-Scale 3D Color Fluorescence Microscopy Images for Developemental Neuroscience. - F. Nourbakhsh; L. Abdeladim; S. Clavreul; K. Loulier; Emmanuel Beaurepaire; Jean Livet; Anatole Chessel (ICIP, 2018)

Automated Quantification With Sub-Micrometer Scale Precision In Volumetric Multicolor Multiphoton Microscopy Images. - Minh Son Phan; Katherine Matho; Lamiae Abdeladim; Jean Livet; Emmanuel Beaurepaire; Anatole Chessel (ISBI, 2019)

nAdder: A scale-space approach for the 3D analysis of neuronal traces. - Minh Son Phan; Katherine Matho; Emmanuel Beaurepaire; Jean Livet; Anatole Chessel (PLoS Comput. Biol., 2022)

NU-Net: a self-supervised smart filter for enhancing blobs in bioimages. - Seongbin Lim; Emmanuel Beaurepaire; Anatole Chessel (ICCV (Workshops), 2023)

BioImageLoader: Easy Handling of Bioimage Datasets for Machine Learning. - Seongbin Lim; Xingjian Zhang; Emmanuel Beaurepaire; Anatole Chessel (CoRR, 2023)