BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery. - Marie-Dominique Devignes; Philippe Franiatte; Nizar Messai; Emmanuel Bresso; Amedeo Napoli; Malika Smaïl-Tabbone (Int. J. Metadata Semant. Ontologies, 2010)

Use of Domain Knowledge for Dimension Reduction - Application to Mining of Drug Side Effects. - Emmanuel Bresso; Sidahmed Benabderrahmane; Malika Smaïl-Tabbone; Gino Marchetti; Arnaud Sinan Karaboga; Michel Souchet; Amedeo Napoli; Marie-Dominique Devignes (KDIR, 2011)

Formal Concept Analysis for the Interpretation of Relational Learning Applied on 3D Protein-binding Sites. - Emmanuel Bresso; Renaud Grisoni; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (KDIR, 2012)

ILP Characterization of 3D Protein-Binding Sites and FCA-Based Interpretation. - Emmanuel Bresso; Renaud Grisoni; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (IC3K, 2012)

Integrative relational Machine-Learning Approach for Understanding Drug Side-Effect Profiles. - Emmanuel Bresso; Renaud Grisoni; Gino Marchetti; Arnaud Sinan Karaboga; Michel Souchet; Marie-Dominique Devignes; Malika Smaïl-Tabbone (BMC Bioinform., 2013)

Organisation et exploitation des connaissances sur les réseaux d'interactions biomoléculaires pour l'étude de l'étiologie des maladies génétiques et la caractérisation des effets secondaires de principes actifs. (Organization and exploitation of biological molecular networks for studying the etiology of genetic diseases and for characterizing drug side effects). - Emmanuel Bresso (2013)

GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease. - Emmanuel Bresso; Roberto C. Togawa; Kim E. Hammond-Kosack; Martin Urban; Bernard Maigret; Natália Florencio Martins (BMC Bioinform., 2016)

Discovering associations between adverse drug events using pattern structures and ontologies. - Gabin Personeni; Emmanuel Bresso; Marie-Dominique Devignes; Michel Dumontier; Malika Smaïl-Tabbone; Adrien Coulet (J. Biomed. Semant., 2017)

Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study. - Pierre Monnin; Emmanuel Bresso; Miguel Couceiro; Malika Smaïl-Tabbone; Amedeo Napoli; Adrien Coulet (ALGOS, 2020)

Investigating ADR mechanisms with knowledge graph mining and explainable AI. - Emmanuel Bresso; Pierre Monnin; Cédric Bousquet; François-Élie Calvier; Ndeye Coumba Ndiaye; Nadine Petitpain; Malika Smaïl-Tabbone; Adrien Coulet (CoRR, 2020)

Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining. - Emmanuel Bresso; Pierre Monnin; Cédric Bousquet; François-Élie Calvier; Ndeye Coumba Ndiaye; Nadine Petitpain; Malika Smaïl-Tabbone; Adrien Coulet (BMC Medical Informatics Decis. Mak., 2021)

Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project. - Emmanuel Bresso; Joao-Pedro Ferreira; Nicolas Girerd; Masatake Kobayashi; Grégoire Preud'homme; Patrick Rossignol; Fayez Zannad; Marie-Dominique Devignes; Malika Smaïl-Tabbone (J. Biomed. Informatics, 2022)