Probabilistic annotation of protein sequences based on functional classifications. - Emmanuel D. Levy; Christos A. Ouzounis; Walter R. Gilks; Benjamin Audit (BMC Bioinform., 2005)

3D Complex: A Structural Classification of Protein Complexes. - Emmanuel D. Levy; José B. Pereira-Leal; Cyrus Chothia; Sarah A. Teichmann (PLoS Comput. Biol., 2006)

CORRIE: enzyme sequence annotation with confidence estimates. - Benjamin Audit; Emmanuel D. Levy; Walter R. Gilks; Leon Goldovsky; Christos A. Ouzounis (BMC Bioinform., 2007)

Competition between protein aggregation and protein complex formation. - Sebastian Pechmann; Emmanuel D. Levy; Gian Gaetano Tartaglia; Michele Vendruscolo (BMC Bioinform., 2008)

Proteins evolve on the edge of supramolecular self-assembly. - Hector Garcia-Seisdedos; Charly Empereur-mot; Nadav Elad; Emmanuel D. Levy (Nat., 2017)

Exhaustive search of linear information encoding protein-peptide recognition. - Abdellali Kelil; Benjamin Dubreuil; Emmanuel D. Levy; Stephen W. Michnick (PLoS Comput. Biol., 2017)

YeastRGB: comparing the abundance and localization of yeast proteins across cells and libraries. - Benjamin Dubreuil; Ehud Sass; Yotam Nadav; Meta Heidenreich; James Georgeson; Uri Weill; Yuanqiang Duan; Matthias Meurer; Maya Schuldiner; Michael Knop; Emmanuel D. Levy (Nucleic Acids Res., 2019)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)

PDBe-KB: collaboratively defining the biological context of structural data. - Mihaly Varadi; Stephen Anyango; David R. Armstrong; John M. Berrisford; Preeti Choudhary; Mandar S. Deshpande; Nurul Nadzirin; Sreenath Nair; Lukás Pravda; Ahsan Tanweer; Bissan Al-Lazikani; Claudia Andreini; et al. (Nucleic Acids Res., 2022)