A 3D Segmentation Algorithm for Ellipsoidal Shapes - Application to Nuclei Extraction. - Emmanuel Soubies; Pierre Weiss; Xavier Descombes (ICPRAM, 2013)

Graph Cut Based Segmentation of Predefined Shapes: Applications to Biological Imaging. - Emmanuel Soubies; Pierre Weiss; Xavier Descombes (ICPRAM (Selected Papers), 2013)

Sparse reconstruction from Multiple-Angle Total Internal Reflection fluorescence Microscopy. - Emmanuel Soubies; Laure Blanc-Féraud; Sebastien Schaub; Gilles Aubert (ICIP, 2014)

A 3D model with shape prior information for biological structures reconstruction using multiple-angle total internal reflection fluorescence microscopy. - Emmanuel Soubies; Laure Blanc-Féraud; Sebastien Schaub; Gilles Aubert (ISBI, 2014)

ℓ0-optimization for channel and DOA sparse estimation. - Adílson Chinatto; Emmanuel Soubies; Cynthia Junqueira; João M. T. Romano; Pascal Larzabal; Jean-Pierre Barbot; Laure Blanc-Féraud (CAMSAP, 2015)

Cells detection using segmentation competition. - Emmanuelle Poulain; Sylvain Prigent 002; Emmanuel Soubies; Xavier Descombes (ISBI, 2015)

A Continuous Exact ℓ0 Penalty (CEL0) for Least Squares Regularized Problem. - Emmanuel Soubies; Laure Blanc-Féraud; Gilles Aubert (SIAM J. Imaging Sci., 2015)

A framework for multi-angle TIRF microscope calibration. - Emmanuel Soubies; Sebastien Schaub; Agata Radwanska; Ellen Van Obberghen-Schilling; Laure Blanc-Féraud; Gilles Aubert (ISBI, 2016)

Erratum: A Continuous Exact ℓ0 Penalty (CEL0) for Least Squares Regularized Problem. - Emmanuel Soubies; Laure Blanc-Féraud; Gilles Aubert (SIAM J. Imaging Sci., 2016)

High density molecule localization for super-resolution microscopy using CEL0 based sparse approximation. - Simon Gazagnes; Emmanuel Soubies; Laure Blanc-Féraud (ISBI, 2017)

Efficient Inversion of Multiple-Scattering Model for Optical Diffraction Tomography. - Emmanuel Soubies; Thanh-An Pham; Michael Unser (CoRR, 2017)

A Unified View of Exact Continuous Penalties for ℓ2-ℓ0 Minimization. - Emmanuel Soubies; Laure Blanc-Féraud; Gilles Aubert (SIAM J. Optim., 2017)

Phaseless diffraction tomography with regularized beam propagation. - Thanh-An Pham; Emmanuel Soubies; JooWon Lim; Alexandre Goy 001; Ferréol Soulez; Demetri Psaltis; Michael Unser (ISBI, 2018)

Pocket Guide to Solve Inverse Problems with GlobalBioIm. - Emmanuel Soubies; Ferréol Soulez; Michael T. McCann; Thanh-An Pham; Laurène Donati; Thomas Debarre; Daniel Sage; Michael Unser (CoRR, 2018)

Joint density map and continuous angular refinement in cryo-electron microscopy. - Mona Zehni; Laurène Donati; Emmanuel Soubies; Zhizhen Zhao 001; Minh N. Do; Michael Unser (Computational Imaging, 2019)

Inner-Loop-Free Admm For Cryo-Em. - Laurène Donati; Emmanuel Soubies; Michael Unser (ISBI, 2019)

Closed-Form Expression Of The Fourier Ring-Correlation For Single-Molecule Localization Microscopy. - Thanh-An Pham; Emmanuel Soubies; Daniel Sage; Michael Unser (ISBI, 2019)

Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation. - Emmanuel Soubies; Laure Blanc-Féraud; Sébastien Schaub; Ellen Van Obberghen-Schilling (ISBI, 2019)

Computational Super-Sectioning for Single-Slice Structured-Illumination Microscopy. - Emmanuel Soubies; Michael Unser (IEEE Trans. Computational Imaging, 2019)

Dictionary Learning with Statistical Sparsity in the Presence of Noise. - Shayan Aziznejad; Emmanuel Soubies; Michael Unser (EUSIPCO, 2020)

Adaptive Regularization for Three-Dimensional Optical Diffraction Tomography. - Thanh-An Pham; Emmanuel Soubies; Ahmed B. Ayoub; Demetri Psaltis; Michael Unser (ISBI, 2020)

New Insights on the Optimality Conditions of the ℓ 2-ℓ 0 Minimization Problem. - Emmanuel Soubies; Laure Blanc-Féraud; Gilles Aubert (J. Math. Imaging Vis., 2020)

On the Identifiability of Transform Learning for Non-Negative Matrix Factorization. - Sixin Zhang; Emmanuel Soubies; Cédric Févotte (IEEE Signal Process. Lett., 2020)

Three-Dimensional Optical Diffraction Tomography With Lippmann-Schwinger Model. - Thanh-An Pham; Emmanuel Soubies; Ahmed B. Ayoub; JooWon Lim; Demetri Psaltis; Michael Unser (IEEE Trans. Computational Imaging, 2020)

Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM. - Mona Zehni; Laurène Donati; Emmanuel Soubies; Zhizhen Zhao 001; Michael Unser (IEEE Trans. Image Process., 2020)

Safe Screening for Sparse Regression with the Kullback-Leibler Divergence. - Cássio F. Dantas; Emmanuel Soubies; Cédric Févotte (ICASSP, 2021)

Diffraction Tomography From Single-Molecule Localization Microscopy: Numerical Feasibility. - Thanh-An Pham; Emmanuel Soubies; Ferréol Soulez; Michael Unser (ISBI, 2021)

On the Relationships between Transform-Learning NMF and Joint-Diagonalization. - Sixin Zhang; Emmanuel Soubies; Cédric Févotte (CoRR, 2021)

Expanding Boundaries of Gap Safe Screening. - Cássio Fraga Dantas; Emmanuel Soubies; Cédric Févotte (J. Mach. Learn. Res., 2021)

Direction-of-Arrival Estimation Through Exact Continuous ℓ2, 0-Norm Relaxation. - Emmanuel Soubies; Adílson Chinatto; Pascal Larzabal; João M. T. Romano; Laure Blanc-Féraud (IEEE Signal Process. Lett., 2021)

Accelerating Non-Negative and Bounded-Variable Linear Regression Algorithms with Safe Screening. - Cássio F. Dantas; Emmanuel Soubies; Cédric Févotte (CoRR, 2022)

Leveraging Joint-Diagonalization in Transform-Learning NMF. - Sixin Zhang; Emmanuel Soubies; Cédric Févotte (IEEE Trans. Signal Process., 2022)

Map-Informed Unrolled Algorithms for Hyper-Parameter Estimation. - Pascal Nguyen; Emmanuel Soubies; Caroline Chaux (ICIP, 2023)

Deep Unrolling for Nonconvex Robust Principal Component Analysis. - Elizabeth Z. C. Tan; Caroline Chaux; Emmanuel Soubies; Vincent Y. F. Tan (MLSP, 2023)

Sphere Refinement in Gap Safe Screening. - Cássio F. Dantas; Emmanuel Soubies; Cédric Févotte (IEEE Signal Process. Lett., 2023)

On $ ell_{0}$ Bregman-Relaxations for Kullback-Leibler Sparse Regressionx. - M'hamed Essafri; Luca Calatroni; Emmanuel Soubies (MLSP, 2024)

Automatic Tuning of Denoising Algorithms Parameters Without Ground Truth. - Arthur Floquet; Sayantan Dutta; Emmanuel Soubies; Duong-Hung Pham; Denis Kouame (IEEE Signal Process. Lett., 2024)

Learning Weighted Least Squares Data Term for Poisson Image Deconvolution. - Abhijit Singh; Emmanuel Soubies; Caroline Chaux (ICASSP, 2025)

Proximal Operators of Sorted Nonconvex Penalties. - Anne Gagneux; Mathurin Massias; Emmanuel Soubies (CoRR, 2025)

Convexity in ReLU Neural Networks: Beyond ICNNs? - Anne Gagneux; Mathurin Massias; Emmanuel Soubies; Rémi Gribonval (J. Math. Imaging Vis., 2025)