Detection of a tandem BRCT in Nbs1 and Xrs2 with functional implications in the DNA damage response. - Emmanuelle Becker; Vincent Meyer; Hocine Madaoui; Raphaël Guérois (Bioinform., 2006)

HMM-Kalign: a tool for generating sub-optimal HMM alignments. - Emmanuelle Becker; Aurélie Cotillard; Vincent Meyer; Hocine Madaoui; Raphaël Guérois (Bioinform., 2007)

Prédictions bioinformatiques des propriétés des domaines de reconnaissance peptidique. (Bioinformatic predictions of the properties of peptide recognition module). - Emmanuelle Becker (2007)

Multifunctional proteins revealed by overlapping clustering in protein interaction network. - Emmanuelle Becker; Benoît Robisson; Charles E. Chapple; Alain Guénoche; Marie-Christine Brun (Bioinform., 2012)

The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community. - Thomas A. Darde; Olivier Sallou; Emmanuelle Becker; Bertrand Evrard; Cyril Monjeaud; Yvan Le Bras; Bernard Jégou; Olivier Collin; Antoine D. Rolland; Frédéric Chalmel (Nucleic Acids Res., 2015)

TOXsIgN: a cross-species repository for toxicogenomic signatures. - Thomas A. Darde; Pierre Gaudriault; Rémi Beranger; Clément Lancien; Annaëlle Caillarec-Joly; Olivier Sallou; Nathalie Bonvallot; Cécile Chevrier; Séverine Mazaud-Guittot; Bernard Jégou; Olivier Collin; Emmanuelle Becker; et al. (Bioinform., 2018)

PAX2GRAPHML: a python library for large-scale regulation network analysis using BioPAX. - François Moreews; Hugo Simon; Anne Siegel; Florence Gondret; Emmanuelle Becker (Bioinform., 2021)

Des données homogènes aux données hétérogènes en biologie des systèmes. (From homogeneous data to heterogeneous data in systems biology). - Emmanuelle Becker (2022)

A multimodal variational autoencoder for estimating progression scores from imaging and microRNA data in rare neurodegenerative diseases. - Virgilio Kmetzsch; Emmanuelle Becker; Dario Saracino; Vincent Anquetil; Daisy Rinaldi; Agnès Camuzat; Thomas Gareau; Isabelle Le Ber; Olivier Colliot (Image Processing, 2022)

Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases. - Marc Melkonian; Camille Juigné; Olivier Dameron; Gwenaël Rabut; Emmanuelle Becker (Bioinform., 2022)

Disease Progression Score Estimation From Multimodal Imaging and MicroRNA Data Using Supervised Variational Autoencoders. - Virgilio Kmetzsch; Emmanuelle Becker; Dario Saracino; Daisy Rinaldi; Agnès Camuzat; Isabelle Le Ber; Olivier Colliot (IEEE J. Biomed. Health Informatics, 2022)

Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies. - Camille Juigné; Olivier Dameron; François Moreews; Florence Gondret; Emmanuelle Becker (Bioinform., 2023)