Alterations of the human gut microbiome in liver cirrhosis. - Nan Qin; Fengling Yang; Ang Li; Edi Prifti; Yanfei Chen; Li Shao; Jing Guo; Emmanuelle Le Chatelier; Jian Yao; Lingjiao Wu; Jiawei Zhou; Shujun Ni; et al. (Nat., 2014)

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. - Kristoffer Forslund; Falk Hildebrand; Trine Nielsen; Gwen Falony; Emmanuelle Le Chatelier; Shinichi Sunagawa; Edi Prifti; Sara Vieira-Silva; Valborg Gudmundsdottir; Helle Krogh Pedersen; Manimozhiyan Arumugam; Karsten Kristiansen; et al. (Nat., 2015)

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data. - Florian Plaza Oñate; Emmanuelle Le Chatelier; Mathieu Almeida; Alessandra C. L. Cervino; Franck Gauthier; Frédéric Magoulès; S. Dusko Ehrlich; Matthieu Pichaud (Bioinform., 2019)

OneNet - One network to rule them all: Consensus network inference from microbiome data. - Camille Champion; Raphaëlle Momal; Emmanuelle Le Chatelier; Mathilde Sola; Mahendra Mariadassou; Magali Berland (PLoS Comput. Biol., 2024)