PHISTO: pathogen-host interaction search tool. - Saliha Durmus Tekir; Tunahan Çakir; Emre Ardiç; Ali Semih Sayilirbas; Gökhan Konuk; Mithat Konuk; Hasret Sariyer; Azat Ugurlu; Ilknur Karadeniz; Arzucan Özgür; Fatih Erdogan Sevilgen; Kutlu Ö. Ülgen (Bioinform., 2013)

Classification of 1D signals using deep neural networks. - Emre Ardiç; Yakup Genc (SIU, 2018)

Data Valuation Methods for Federated Learning. - Emre Ardiç; Yakup Genç (SIU, 2023)

Enhanced Privacy and Communication Efficiency in Non-IID Federated Learning With Adaptive Quantization and Differential Privacy. - Emre Ardiç; Yakup Genç (IEEE Access, 2025)