Biology - Computing large sparse multivariate optimization problems with an application in biophysics. - Emre H. Brookes; Rajendra V. Boppana; Borries Demeler (SC, 2006)

Parsimonious regularization using genetic algorithms applied to the analysis of analytical ultracentrifugation experiments. - Emre H. Brookes; Borries Demeler (GECCO, 2007)

Performance optimization of large non-negatively constrained least squares problems with an application in biophysics. - Emre H. Brookes; Borries Demeler (TG, 2010)

UltraScan gateway enhancements: in collaboration with TeraGrid advanced user support. - Borries Demeler; Raminderjeet Singh; Marlon E. Pierce; Emre H. Brookes; Suresh Marru; Bruce Dubbs (TG, 2011)

Ultrascan solution modeler: integrated hydrodynamic parameter and small angle scattering computation and fitting tools. - Emre H. Brookes; Raminderjeet Singh; Marlon E. Pierce; Suresh Marru; Borries Demeler; Mattia Rocco (XSEDE, 2012)

US-SOMO cluster methods: year one perspective. - Emre H. Brookes; Raminderjeet Singh; Marlon E. Pierce; Suresh Marru; Borries Demeler; Mattia Rocco (XSEDE, 2013)

GenApp module execution and airavata integration. - Emre H. Brookes; Nadeem Anjum; Joseph E. Curtis; Suresh Marru; Raminder Singh; Marlon E. Pierce (GCE@SC, 2014)

An Open Extensible Multi-Target Application Generation Tool for Simple Rapid Deployment of Multi-Scale Scientific Codes. - Emre H. Brookes (XSEDE, 2014)

A performance predictor for UltraScan supercomputer calculations. - Haram Kim; Emre H. Brookes; Borries Demeler (XSEDE, 2015)

The GenApp framework integrated with Airavata for managed compute resource submissions. - Emre H. Brookes; Nadeem Anjum; Joseph E. Curtis; Suresh Marru; Raminder Singh; Marlon E. Pierce (Concurr. Comput. Pract. Exp., 2015)

GSoC 2015 student contributions to GenApp and Airavata. - Emre H. Brookes; Abhishek Kapoor; Priyanshu Patra; Suresh Marru; Raminder Singh; Marlon E. Pierce (Concurr. Comput. Pract. Exp., 2016)

GenApp Integrated with OpenStack Supports Elastic Computing on Jetstream. - Emre H. Brookes; Alexey Savelyev (PEARC, 2017)

Towards a Science Gateway Reference Architecture. - Marlon E. Pierce; Mark A. Miller; Emre H. Brookes; Mona Wong; Yan Liu 009; Enis Afgan; Sandra Gesing; Maytal Dahan; Suresh Marru; Tony Walker (IWSG, 2018)

GenApp, Containers and Abaco: Technical Paper. - Emre H. Brookes; Joe Stubbs (PEARC, 2019)

GenApp: Extensible tool for rapid generation of web and native GUI applications. - Alexey Savelyev; Emre H. Brookes (Future Gener. Comput. Syst., 2019)

Measuring success for a future vision: Defining impact in science gateways/virtual research environments. - Prasad Calyam; Nancy Wilkins-Diehr; Mark A. Miller; Emre H. Brookes; Ritu Arora; Amit Chourasia; Douglas M. Jennewein; Viswanath Nandigam; M. Drew LaMar; Sean B. Cleveland; Greg Newman; Shaowen Wang 001; et al. (Concurr. Comput. Pract. Exp., 2021)

Airavata Metascheduler: A Reliable, Fault Tolerant, and Resource-Aware Job Scheduling Service. - Isuru Ranawaka; Eroma Abeysinghe; Dimuthu Wannipurage; Dinuka De Silva; Emre H. Brookes; Suresh Marru; Marcus Christie; Sudhakar Pamidighantam; Marlon E. Pierce (PEARC, 2023)