CVCDAP: an integrated platform for molecular and clinical analysis of cancer virtual cohorts. - Xiaoqing Guan; Meng Cai; Yang Du; Ence Yang; Jiafu Ji; Jianmin Wu (Nucleic Acids Res., 2020)

PINA 3.0: mining cancer interactome. - Yang Du; Meng Cai; Xiaofang Xing; Jiafu Ji; Ence Yang; Jianmin Wu (Nucleic Acids Res., 2021)

Genome-Wide Feature Selection of Robust mRNA Biomarkers for Body Fluid Identification. - Guangyi He; Liming Xiao; Yingnan Bian; Ence Yang (DMBD (2), 2022)

DEBKS: A Tool to Detect Differentially Expressed Circular RNAs. - Zelin Liu; Huiru Ding; Jianqi She; Chunhua Chen; Weiguang Zhang; Ence Yang (Genom. Proteom. Bioinform., 2022)