Pattern-Based OCX Components for the Electronic Patient Record. - Beatriz F. Leão; Pablo J. Madril; Eneida A. Mendonça; Paulo Roberto de Lima Lopes; Daniel Sigulem (AMIA, 1997)

Reproducibility of interpreting "and" and "or" in terminology systems. - Eneida A. Mendonça; James J. Cimino; Keith E. Campbell; Kent A. Spackman (AMIA, 1998)

The Software Challenge for the Next Decade: the Global Objects Scenario. - Beatriz de Faria Leão; Pablo J. Madril; Eneida A. Mendonça; Paulo R. Lopes; Daniel Sigulem; Meide Silva Anção; Lincoln Moura (MedInfo, 1998)

Evaluation of the Information Sources Map. - Eneida A. Mendonça; James J. Cimino (AMIA, 1999)

An evaluation of patient access to their electronic medical records via the World Wide Web. - James J. Cimino; Jianhua Li; Eneida A. Mendonça; Soumitra Sengupta; Vimla L. Patel; André Kushniruk (AMIA, 2000)

Automated knowledge extraction from MEDLINE citations. - Eneida A. Mendonça; James J. Cimino (AMIA, 2000)

Model Formulation: Representing Nursing Activities within a Concept-oriented Terminological System: Evaluation of a Type Definition. - Suzanne Bakken; Margaret Cashen; Eneida A. Mendonça; Ann O'Brien; Joan Zieniewicz (J. Am. Medical Informatics Assoc., 2000)

Content Evaluation of a Knowledge Base. - Eneida A. Mendonça; James J. Cimino (AMIA, 2001)

Using narrative reports to support a digital library. - Eneida A. Mendonça; James J. Cimino; Stephen B. Johnson (AMIA, 2001)

Building a Knowledge Base to Support a Digital Library. - Eneida A. Mendonça; James J. Cimino (MedInfo, 2001)

Accessing Heterogeneous Sources of Evidence to Answer Clinical Questions. - Eneida A. Mendonça; James J. Cimino; Stephen B. Johnson; Yoon-Ho Seol (J. Biomed. Informatics, 2001)

Analyzing the Semantics of patient data to rank records of literature retrieval. - Eneida A. Mendonça; Stephen B. Johnson; Yoon-Ho Seol; James J. Cimino (ACL Workshop on Natural Language Processing in the Biomedical Domain, 2002)

Using Patient Data to Rank Records of Literature Retrieval. - Eneida A. Mendonça; James J. Cimino; Stephen B. Johnson (AMIA, 2002)

The cognitive demands of an innovative query user interface. - Di Wang; David R. Kaufman; Eneida A. Mendonça; Yoon-Ho Seol; Stephen B. Johnson; James J. Cimino (AMIA, 2002)

Adapting Current Arden Syntax Knowledge for an Object Oriented Event Monitor. - Jeeyae Choi; Yves A. Lussier; Eneida A. Mendonça (AMIA, 2003)

A Native XML Database Design for Clinical Document Research. - Stephen B. Johnson; David A. Campbell; Michael Krauthammer; P. Karina Tulipano; Eneida A. Mendonça; Carol Friedman; George Hripcsak (AMIA, 2003)

Guideline Interaction: a study of interactions among drug-disease contraindication rules. - Te-Hui Kuo; Eneida A. Mendonça; Jianrong Li; Yves A. Lussier (AMIA, 2003)

Development of Infobuttons in a Wireless Environment. - Jianbo Lei; Elizabeth S. Chen; Peter D. Stetson; Lawrence K. McKnight; Eneida A. Mendonça; James J. Cimino (AMIA, 2003)

A "Systematics" Tool for Medical Terminologies. - Ying Tao; Eneida A. Mendonça; Yves A. Lussier (AMIA, 2003)

Scenario-based Assessment of Physicians' Information Needs. - Yoon-Ho Seol; David R. Kaufman; Eneida A. Mendonça; James J. Cimino; Stephen B. Johnson (MedInfo, 2004)

A Tool for Abstracting Relevant Classes of Concepts: the Common Ancestry Summarizer. - Ying Tao; Eneida A. Mendonça; Yves A. Lussier (MedInfo, 2004)

Approach to mobile information and communication for health care. - Eneida A. Mendonça; Elizabeth S. Chen; Peter D. Stetson; Lawrence K. McKnight; Jianbo Lei; James J. Cimino (Int. J. Medical Informatics, 2004)

Information technology as an infrastructure for patient safety: nursing research needs. - Susan K. Newbold; Gilad J. Kuperman; Suzanne Bakken; Patricia Flatley Brennan; Eneida A. Mendonça; Hyeoun-Ae Park; Aleksandar Radenovic (Int. J. Medical Informatics, 2004)

Application of Information Technology: PalmCIS: A Wireless Handheld Application for Satisfying Clinician Information Needs. - Elizabeth S. Chen; Eneida A. Mendonça; Lawrence K. McKnight; Peter D. Stetson; Jianbo Lei; James J. Cimino (J. Am. Medical Informatics Assoc., 2004)

Extracting information on pneumonia in infants using natural language processing of radiology reports. - Eneida A. Mendonça; Janet Haas; Lyudmila Shagina; Elaine Larson; Carol Friedman (J. Biomed. Informatics, 2005)

Consensus-based Construction of a Taxonomy of Clinical Trial Tasks. - Philip R. O. Payne; James R. Deitzer; Eneida A. Mendonça; Justin B. Starren (AMIA, 2006)

ZebraHunter: Searching Rare Medical Diagnoses and Retrieving Relevant Citations. - Eric Silfen; Chintan Patel; Eneida A. Mendonça; Carol Friedman (AMIA, 2006)

Modeling Participant-Related Clinical Research Events Using Conceptual Knowledge Acquisition Techniques. - Philip R. O. Payne; Eneida A. Mendonça; Justin B. Starren (AMIA, 2007)

PDA-based Informatics Strategies for Tobacco Use Screening and Smoking Cessation Management: A Case Study. - Suzanne Bakken; W. Dan Roberts; Elizabeth S. Chen; Joann Dilone; Nam-Ju Lee; Eneida A. Mendonça; Marianthi Markatou (MedInfo, 2007)

Multilingual Information Retrieval in Thoracic Radiology: Feasibility Study. - André Coutinho Castilla; Sérgio Shiguemi Furuie; Eneida A. Mendonça (MedInfo, 2007)

Development and Evaluation of a PDA-based Decision Support System for Pediatric Depression Screening. - Ritamarie John; Penélope Buschman; Mosely Chaszar; Judy Honig; Eneida A. Mendonça; Suzanne Bakken (MedInfo, 2007)

Gene symbol disambiguation using knowledge-based profiles. - Hua Xu 001; Jungwei Fan 001; George Hripcsak; Eneida A. Mendonça; Marianthi Markatou; Carol Friedman (Bioinform., 2007)

Conceptual knowledge acquisition in biomedicine: A methodological review. - Philip R. O. Payne; Eneida A. Mendonça; Stephen B. Johnson; Justin Starren (J. Biomed. Informatics, 2007)

Model Formulation: An Electronic Health Record Based on Structured Narrative. - Stephen B. Johnson; Suzanne Bakken; Daniel Dine; Sookyung Hyun; Eneida A. Mendonça; Frances P. Morrison; Tiffani J. Bright; Tielman Van Vleck; Jesse O. Wrenn; Peter D. Stetson (J. Am. Medical Informatics Assoc., 2008)

A multi-level model of information seeking in the clinical domain. - Peter W. Hung; Stephen B. Johnson; David R. Kaufman; Eneida A. Mendonça (J. Biomed. Informatics, 2008)

PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. - Lee T. Sam; Eneida A. Mendonça; Jianrong Li; Judith A. Blake; Carol Friedman; Yves A. Lussier (BMC Bioinform., 2009)

Research Paper: Voice Capture of Medical Residents' Clinical Information Needs During an Inpatient Rotation. - Herbert S. Chase; David R. Kaufman; Stephen B. Johnson; Eneida A. Mendonça (J. Am. Medical Informatics Assoc., 2009)

Selected proceedings of the 2010 Summit on Translational Bioinformatics. - Eneida A. Mendonça; Peter Tarczy-Hornoch (BMC Bioinform., 2010)

Scalability and cost of a cloud-based approach to medical NLP. - Kyle Chard; Michael Russell; Yves A. Lussier; Eneida A. Mendonça; Jonathan C. Silverstein (CBMS, 2011)

Proteomic characterization of non-small cell lung cancer in a comprehensive translational thoracic oncology database. - Mosmi Surati; Matthew Robinson; Suvobroto Nandi; Leonardo Faoro; Carley Demchuk; Cleo E. Rolle; Rajani Kanteti; Benjamin D. Ferguson; Rifat Hasina; Tara C. Gangadhar; April K. Salama; Qudsia Arif; et al. (J. Clin. Bioinform., 2011)

Conflicting Biomedical Assumptions for Mathematical Modeling: The Case of Cancer Metastasis. - Anna Divoli; Eneida A. Mendonça; James A. Evans; Andrey Rzhetsky (PLoS Comput. Biol., 2011)

mHealth Decision Support System for Guideline-based Care: An RCT. - Suzanne Bakken; Elizabeth S. Chen; Jeeyae Choi; Haomiao Jia; Ritamarie John; Nam-Ju Lee; Eneida A. Mendonça; Willaim Roberts; Olivia Velez (AMIA, 2012)

Machine Learning Analysis to Understand and Improve Protocol Processing Times by Institutional Review Boards. - Kimberly Shoenbill; Yiqiang Song; Nichelle Cobb; Marc Drezner; Eneida A. Mendonça (AMIA, 2013)

What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support. - David A. Hanauer; Gregory William Hruby; Daniel Fort; Luke V. Rasmussen; Eneida A. Mendonça; Chunhua Weng (AMIA, 2014)

Genetic data and electronic health records: a discussion of ethical, logistical and technological considerations. - Kimberly Shoenbill; Norman Fost; Umberto Tachinardi; Eneida A. Mendonça (J. Am. Medical Informatics Assoc., 2014)

Relational machine learning for electronic health record-driven phenotyping. - Peggy L. Peissig; Vítor Santos Costa; Michael Caldwell; Carla Rottscheit; Richard L. Berg; Eneida A. Mendonça; David Page (J. Biomed. Informatics, 2014)

What Are Frequent Data Requests from Researchers? A Conceptual Model of Researchers' EHR Data Needs for Comparative Effectiveness Research. - Gregory William Hruby; Praveen Chandar Ravichandran; Julia Hoxha; Eneida A. Mendonça; David A. Hanauer; Chunhua Weng (AMIA, 2015)

Benefits of a Structure Pipeline for Research Data Request. - Eneida A. Mendonça; Lisa Gress; James Van Schyndle; Deborah Yoshihara; Thomas Mish; Umberto Tachinardi (CRI, 2016)

A data-driven concept schema for defining clinical research data needs. - Gregory William Hruby; Julia Hoxha; Praveen Chandar Ravichandran; Eneida A. Mendonça; David A. Hanauer; Chunhua Weng (Int. J. Medical Informatics, 2016)

Privacy-Preserving Record Linkage to Identify Fragmented Electronic Medical Records in the All of Us Research Program. - Abel N. Kho; Jingzhi Yu; Molly Scannell Bryan; Charon Gladfelter; Howard S. Gordon; Shaun J. Grannis; Margaret B. Madden; Eneida A. Mendonça; Vesna Mitrovic; Raj C. Shah; Umberto Tachinardi; Bradley W. Taylor (PKDD/ECML Workshops (2), 2019)

Development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department. - Brian W. Patterson; Gwen C. Jacobsohn; Manish N. Shah; Yiqiang Song; Apoorva Maru; Arjun K. Venkatesh; Monica Zhong; Katherine Taylor; Azita G. Hamedani; Eneida A. Mendonça (BMC Medical Informatics Decis. Mak., 2019)

Natural language processing of lifestyle modification documentation. - Kimberly Shoenbill; Yiqiang Song; Lisa Gress; Heather Johnson; Maureen A. Smith; Eneida A. Mendonça (Health Informatics J., 2020)

Building Cancer Control Capacity in Health Professionals Through Telementoring: A Survey Study of a Cancer Prevention and Survivorship Care ECHO Program. - Zheng Z. Milgrom; Tyler S. Severance; Caitlin M. Scanlon; Anyé T. Carson; Andrea D. Janota; Terry A. Vik; Joan M. Duwve; Brian E. Dixon; Eneida A. Mendonça (MedInfo, 2021)

Sensitivity and Specificity of Real-World Social Factor Screening Approaches. - Joshua R. Vest; Wei Wu; Eneida A. Mendonça (J. Medical Syst., 2021)

Quantifying Electronic Health Record (EHR) Data Quality in Telehealth and Office-based Type 2 Diabetes Care. - Kevin Wiley Jr.; Eneida A. Mendonça; Justin Blackburn; Nir Menachemi; Mary De Groor; Joshua R. Vest (AMIA, 2022)

How Do Dental Clinicians Obtain Up-To-Date Patient Medical Histories? Modeling Strengths, Drawbacks, and Proposals for Improvements. - Shuning Li; Anushri Singh Rajapuri; Grace Gomez Felix Gomez; Titus Schleyer; Eneida A. Mendonça; Thankam P. Thyvalikakath (Frontiers Digit. Health, 2022)

A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. - Ken Wiley; Laura Findley; Madison Goldrich; Tejinder K. Rakhra-Burris; Ana Stevens; Pamela Williams; Carol J. Bult; Rex L. Chisholm; Patricia Deverka; Geoffrey S. Ginsburg; Eric D. Green; Gail P. Jarvik; et al. (J. Am. Medical Informatics Assoc., 2022)

An evaluation of an Extension for Community Healthcare Outcomes (ECHO) intervention in cancer prevention and survivorship care. - Zheng Z. Milgrom; Tyler S. Severance; Caitlin M. Scanlon; Anyé T. Carson; Andrea D. Janota; Terry A. Vik; Joan M. Duwve; Brian E. Dixon; Eneida A. Mendonça (BMC Medical Informatics Decis. Mak., 2022)

Quantifying Electronic Health Record Data Quality in Telehealth and Office-Based Diabetes Care. - Kevin K. Wiley; Eneida A. Mendonça; Justin Blackburn; Nir Menachemi; Mary De Groot; Joshua R. Vest (Appl. Clin. Inform., 2022)

Environment Scan of Generative AI Infrastructure for Clinical and Translational Science. - Betina Idnay; Zihan Xu; William G. Adams; Mohammad Adibuzzaman; Nicholas R. Anderson 001; Neil Bahroos; Douglas S. Bell; Cody Bumgardner; Thomas R. Campion Jr.; Victor M. Castro; James J. Cimino; I. Glenn Cohen; et al. (CoRR, 2024)

Call for papers: Special issue on biomedical multimodal large language models - novel approaches and applications. - Jiang Bian 001; Yifan Peng 002; Eneida A. Mendonça; Imon Banerjee; Hua Xu 001; Hong Sun; Ye Ye; Casey Overby Taylor; Anália Maria Garcia Lourenço; Alejandro Rodríguez González; Elena Tutubalina (J. Biomed. Informatics, 2024)