HotRegion: a database of predicted hot spot clusters. - Engin Cukuroglu; Attila Gürsoy; Ozlem Keskin (Nucleic Acids Res., 2012)

PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. - Alper Baspinar; Engin Cukuroglu; Ruth Nussinov; Ozlem Keskin; Attila Gürsoy (Nucleic Acids Res., 2014)

An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets. - Florian Schmidt 003; Markus List; Engin Cukuroglu; Sebastian Köhler 001; Jonathan Göke; Marcel H. Schulz (Bioinform., 2018)