Role of the resource broker in the Grid. - Enis Afgan (ACM Southeast Regional Conference, 2004)

Grid Resource Broker Using Application Benchmarking. - Enis Afgan; Vijay Velusamy; Purushotham V. Bangalore (EGC, 2005)

Design, development and usage of a generic job submission grid service. - Enis Afgan; William T. Jones (ACM Southeast Regional Conference, 2006)

Dynamic Task Distribution in the Grid for BLAST. - Enis Afgan; Pavithran Sathyanarayana; Purushotham V. Bangalore (GrC, 2006)

Performance Characterization of BLAST for the Grid. - Enis Afgan; Purushotham V. Bangalore (BIBE, 2007)

Application Specification Language (ASL) - A Language for Describing Applications in Grid Computing. - Enis Afgan; Purushotham V. Bangalore (GSEM, 2007)

Using Domain-Specific Modeling to Generate User Interfaces for Wizards. - Enis Afgan; Jeffrey G. Gray; Purushotham V. Bangalore (MDDAUI@MoDELS, 2007)

G-BLAST: A Grid Service for BLAST. - Purushotham V. Bangalore; Enis Afgan (GCA, 2008)

Experiences with developing and deploying dynamic BLAST. - Enis Afgan; Purushotham V. Bangalore (Mardi Gras Conference, 2008)

A common application platform for the SURAgrid (CAP). - Mahantesh Halappanavar; John-Paul Robinson; Enis Afgan; Mary Fran Yafchak; Purushotham V. Bangalore (Mardi Gras Conference, 2008)

Embarrassingly parallel jobs are not embarrassingly easy to schedule on the grid. - Enis Afgan; Purushotham V. Bangalore (MTAGS@SC, 2008)

GridAtlas - A grid application and resource configuration repository and discovery service. - Enis Afgan; Purushotham V. Bangalore; Dustin Duncan (CLUSTER, 2009)

Galaxy CloudMan: delivering cloud compute clusters. - Enis Afgan; Dannon Baker; Nathan Coraor; Brad Chapman; Anton Nekrutenko; James Taylor 001 (BMC Bioinform., 2010)

Exploiting performance characterization of BLAST in the grid. - Enis Afgan; Purushotham V. Bangalore (Clust. Comput., 2010)

Application Information Services for distributed computing environments. - Enis Afgan; Purushotham V. Bangalore; Karolj Skala (Future Gener. Comput. Syst., 2011)

Galaxy: A Gateway to Tools in e-Science. - Enis Afgan; Jeremy Goecks; Dannon Baker; Nate Coraor; Anton Nekrutenko; James Taylor 001 (Guide to e-Science, 2011)

Bio-Linux as a tool for bioinformatics training. - Timothy Booth; Mesude Bicak; Hyun Soon Gweon; Dawn Field; Enis Afgan (BIBE, 2012)

CloudMan as a tool execution framework for the cloud. - Enis Afgan; Karolj Skala; Davor Davidovic; Tomislav Lipic; Ivan Sovic (MIPRO, 2012)

CloudMan as a platform for tool, data, and analysis distribution. - Enis Afgan; Brad Chapman; James Taylor 001 (BMC Bioinform., 2012)

A reference model for deploying applications in virtualized environments. - Enis Afgan; Dannon Baker; Anton Nekrutenko; James Taylor 001 (Concurr. Comput. Pract. Exp., 2012)

Scheduling and planning job execution of loosely coupled applications. - Enis Afgan; Purushotham V. Bangalore; Tibor Skala (J. Supercomput., 2012)

BioBlend: automating pipeline analyses within Galaxy and CloudMan. - Clare Sloggett; Nuwan Goonasekera; Enis Afgan (Bioinform., 2013)

Impact of 3D Graphic Structure Complexity to the Rendering Time. - Tibor Skala; Karolj Skala; Enis Afgan (J. Circuits Syst. Comput., 2013)

Delivering bioinformatics MapReduce applications in the cloud. - Lukas Forer; Tomislav Lipic; Sebastian Schönherr; Hansi Weißensteiner; Davor Davidovic; Florian Kronenberg; Enis Afgan (MIPRO, 2014)

Galaxy cluster to cloud - genomics at scale. - Enis Afgan; Dannon Baker; John Chilton; Nathan Coraor; James Taylor 001 (GCE@SC, 2014)

BioBlend.objects: metacomputing with Galaxy. - Simone Leo; Luca Pireddu; Gianmauro Cuccuru; Luca Lianas; Nicola Soranzo; Enis Afgan; Gianluigi Zanetti (Bioinform., 2014)

Community-driven development for computational biology at Sprints, Hackathons and Codefests. - Steffen Möller; Enis Afgan; Michael Banck; Raoul Jean Pierre Bonnal; Timothy Booth; John Chilton; Peter J. A. Cock; Markus Gumbel; Nomi L. Harris; Richard C. G. Holland; Matús Kalas; László Kaján; et al. (BMC Bioinform., 2014)

Building and provisioning bioinformatics environments on public and private Clouds. - Enis Afgan; Konstantinos Krampis; Nuwan Goonasekera; Karolj Skala; James Taylor 001 (MIPRO, 2015)

Cloudflow - A framework for MapReduce pipeline development in Biomedical Research. - Lukas Forer; Enis Afgan; Hansi Weißensteiner; Davor Davidovic; Günther Specht; Florian Kronenberg; Sebastian Schönherr (MIPRO, 2015)

Enabling cloud bursting for life sciences within Galaxy. - Enis Afgan; Nathan Coraor; John Chilton; Dannon Baker; James Taylor 001; The Galaxy Team (Concurr. Comput. Pract. Exp., 2015)

Scalable Distributed Computing Hierarchy: Cloud, Fog and Dew Computing. - Karolj Skala; Davor Davidovic; Enis Afgan; Ivan Sovic; Zorislav Sojat (Open J. Cloud Comput., 2015)

Architectural models for deploying and running virtual laboratories in the cloud. - Enis Afgan; Andrew Lonie; James Taylor 001; Karolj Skala; Nuwan Goonasekera (MIPRO, 2016)

CloudBridge: a Simple Cross-Cloud Python Library. - Nuwan Goonasekera; Andrew Lonie; James Taylor 001; Enis Afgan (XSEDE, 2016)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. - Enis Afgan; Dannon Baker; Marius van den Beek; Daniel J. Blankenberg; Dave Bouvier; Martin Cech; John Chilton; Dave Clements; Nate Coraor; Carl Eberhard; Björn A. Grüning; Aysam Guerler; et al. (Nucleic Acids Res., 2016)

Cloudflow - enabling faster biomedical pipelines with MapReduce and Spark. - Lukas Forer; Enis Afgan; Hansi Weißensteiner; Davor Davidovic; Günther Specht; Florian Kronenberg; Sebastian Schönherr (Scalable Comput. Pract. Exp., 2016)

Introduction to the Special Issue on Distributed Computing with Applications in Bioengineering. - Karolj Skala; Roman Trobec; Enis Afgan (Scalable Comput. Pract. Exp., 2016)

Federated Galaxy: Biomedical Computing at the Frontier. - Enis Afgan; Vahid Jalili; Nuwan Goonasekera; James Taylor 001; Jeremy Goecks (IEEE CLOUD, 2018)

Towards a Science Gateway Reference Architecture. - Marlon E. Pierce; Mark A. Miller; Emre H. Brookes; Mona Wong; Yan Liu 009; Enis Afgan; Sandra Gesing; Maytal Dahan; Suresh Marru; Tony Walker (IWSG, 2018)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update. - Enis Afgan; Dannon Baker; Bérénice Batut; Marius van den Beek; Dave Bouvier; Martin Cech; John Chilton; Dave Clements; Nate Coraor; Björn A. Grüning; Aysam Guerler; Jennifer Hillman-Jackson; et al. (Nucleic Acids Res., 2018)

Jetstream - Early operations performance, adoption, and impacts. - David Y. Hancock; Craig A. Stewart; Matthew Vaughn; Jeremy Fischer; John Michael Lowe; George W. Turner; Tyson Lee Swetnam; Tyler K. Chafin; Enis Afgan; Marlon E. Pierce; Winona Snapp-Childs (Concurr. Comput. Pract. Exp., 2019)

CloudLaunch: Discover and deploy cloud applications. - Enis Afgan; Andrew Lonie; James Taylor 001; Nuwan Goonasekera (Future Gener. Comput. Syst., 2019)

Custos: Security Middleware for Science Gateways. - Isuru Ranawaka; Suresh Marru; Juleen Graham; Aarushi Bisht; Jim Basney; Terry Fleury; Jeff Gaynor; Dimuthu Wannipurage; Marcus Christie; Alexandru Mahmoud; Enis Afgan; Marlon E. Pierce (PEARC, 2020)

Cloud bursting galaxy: federated identity and access management. - Vahid Jalili; Enis Afgan; James Taylor 001; Jeremy Goecks (Bioinform., 2020)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update. - Vahid Jalili; Enis Afgan; Qiang Gu; Dave Clements; Daniel J. Blankenberg; Jeremy Goecks; James Taylor 001; Anton Nekrutenko (Nucleic Acids Res., 2020)

GYAN: Accelerating Bioinformatics Tools in Galaxy with GPU-Aware Computation Mapping. - Gulsum Gudukbay; Jashwant Raj Gunasekaran; Yilin Feng; Mahmut T. Kandemir; Anton Nekrutenko; Chita R. Das; Paul Medvedev; Björn A. Grüning; Nate Coraor; Nathan Roach; Enis Afgan (IPDPS Workshops, 2021)

GalaxyCloudRunner: enhancing scalable computing for Galaxy. - Nuwan Goonasekera; Alexandru Mahmoud; John Chilton; Enis Afgan (Bioinform., 2021)

Experiences with Integrating Custos SecurityServices. - Isuru Ranawaka; Samitha Liyanage; Dannon Baker; Alexandru Mahmoud; Juleen Graham; Terry Fleury; Dimuthu Wannipurage; Yu Ma; Enis Afgan; Jim Basney; Suresh Marru; Marlon E. Pierce (CoRR, 2021)

Custos Secrets: a Service for Managing User-Provided Resource Credential Secrets for Science Gateways. - Isuru Ranawaka; Nuwan Goonasekera; Enis Afgan; Jim Basney; Suresh Marru; Marlon E. Pierce (PEARC, 2022)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. - Enis Afgan; Anton Nekrutenko; Björn A. Grüning; Daniel J. Blankenberg; Jeremy Goecks; Michael C. Schatz; Alexander E. Ostrovsky; Alexandru Mahmoud; Andrew J. Lonie; Anna Syme; Anne Fouilloux; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2022)

Right-sizing compute resource allocations for bioinformatics tools with Total Perspective Vortex. - Nuwan Goonasekera; Catherine J. Bromhead; Simon L. Gladman; Nate Coraor; Björn A. Grüning; Enis Afgan (CoRR, 2023)

Galaxy Helm chart: a standardized method for deploying production Galaxy servers. - Nuwan Goonasekera; Alexandru Mahmoud; Keith Suderman; Enis Afgan (Bioinform., 2024)