Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim). - Alexander Yermanos; Victor Greiff; Nike Julia Krautler; Ulrike Menzel; Andreas Dounas; Enkelejda Miho; Annette Oxenius; Tanja Stadler; Sai T. Reddy (Bioinform., 2017)

Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences. - Erand Smakaj; Lmar Babrak; Mats Ohlin; Mikhail Shugay; Bryan S. Briney; Deniz Tosoni; Christopher Galli; Vendi Grobelsek; Igor D'Angelo; Branden J. Olson; Sai T. Reddy; Victor Greiff; et al. (Bioinform., 2020)

Machine Learning Detects Anti-DENV Signatures in Antibody Repertoire Sequences. - Alexander Horst; Erand Smakaj; Eriberto Noel Natali; Deniz Tosoni; Lmar Babrak; Patrick Meier; Enkelejda Miho (Frontiers Artif. Intell., 2021)

Unconstrained generation of synthetic antibody-antigen structures to guide machine learning methodology for antibody specificity prediction. - Philippe A. Robert; Rahmad Akbar; Robert Frank 006; Milena Pavlovic; Michael Widrich; Igor Snapkov; Andrei Slabodkin; Maria Chernigovskaya; Lonneke Scheffer; Eva Smorodina; Puneet Rawat; Brij Bhushan Mehta; et al. (Nat. Comput. Sci., 2022)