Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data. - Francesca Finotello; Enrico Lavezzo; Paolo Fontana; Denis Peruzzo; Alessandro Albiero; Luisa Barzon; Marco Falda; Barbara Di Camillo; Stefano Toppo (Briefings Bioinform., 2012)

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms. - Marco Falda; Stefano Toppo; Alessandro Pescarolo; Enrico Lavezzo; Barbara Di Camillo; Andrea Facchinetti; Elisa Cilia; Riccardo Velasco; Paolo Fontana (BMC Bioinform., 2012)

keeSeek: searching distant non-existing words in genomes for PCR-based applications. - Marco Falda; Paolo Fontana; Luisa Barzon; Stefano Toppo; Enrico Lavezzo (Bioinform., 2014)

Reducing bias in RNA sequencing data: a novel approach to compute counts. - Francesca Finotello; Enrico Lavezzo; Luca Bianco; Luisa Barzon; Paolo Mazzon; Paolo Fontana; Stefano Toppo; Barbara Di Camillo (BMC Bioinform., 2014)

Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms. - Luca Bianco; Samantha Riccadonna; Enrico Lavezzo; Marco Falda; Elide Formentin; Duccio Cavalieri; Stefano Toppo; Paolo Fontana (Bioinform., 2017)

NeSSie: a tool for the identification of approximate DNA sequence symmetries. - Michele Berselli; Enrico Lavezzo; Stefano Toppo (Bioinform., 2018)

Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene. - Francesco Sambo; Francesca Finotello; Enrico Lavezzo; Giacomo Baruzzo; Giulia Masi; Elektra Peta; Marco Falda; Stefano Toppo; Luisa Barzon; Barbara Di Camillo (BMC Bioinform., 2018)

G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide. - Enrico Lavezzo; Michele Berselli; Ilaria Frasson; Rosalba Perrone; Giorgio Palù; Alessandra R. Brazzale; Sara N. Richter; Stefano Toppo (PLoS Comput. Biol., 2018)

QPARSE: searching for long-looped or multimeric G-quadruplexes potentially distinctive and druggable. - Michele Berselli; Enrico Lavezzo; Stefano Toppo (Bioinform., 2020)

ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy. - Marco Antonio Tangaro; Giuseppe Defazio; Bruno Fosso; Vito Flavio Licciulli; Giorgio Grillo; Giacinto Donvito; Enrico Lavezzo; Giacomo Baruzzo; Graziano Pesole; Monica Santamaria (Bioinform., 2021)

FunTaxIS-lite: a simple and light solution to investigate protein functions in all living organisms. - Federico Bianca; Emilio Ispano; Ermanno Gazzola; Enrico Lavezzo; Paolo Fontana; Stefano Toppo (Bioinform., 2023)