New Insights into the Genetic Control of Gene Expression using a Bayesian Multi-tissue Approach. - Enrico Petretto; Leonardo Bottolo; Sarah R. Langley; Matthias Heinig; Chris McDermott-Roe; Rizwan Sarwar; Michal Pravenec; Norbert Hübner; Timothy J. Aitman; Stuart A. Cook; Sylvia Richardson (PLoS Comput. Biol., 2010)

ESS++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration. - Leonardo Bottolo; Marc Chadeau-Hyam; David I. Hastie; Sarah R. Langley; Enrico Petretto; Laurence Tiret; David Tregouet; Sylvia Richardson (Bioinform., 2011)

JunD/AP1 regulatory network analysis during macrophage activation in a rat model of crescentic glomerulonephritis. - Prashant K. Srivastava; Richard P. Hull; Jacques Behmoaras; Enrico Petretto; Timothy J. Aitman (BMC Syst. Biol., 2013)

WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools. - Owen J. L. Rackham; Petros Dellaportas; Enrico Petretto; Leonardo Bottolo (Bioinform., 2015)

Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data. - Juan J. Diaz-Montana; Owen J. L. Rackham; Norberto Díaz-Díaz; Enrico Petretto (Bioinform., 2016)

MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues. - Alex Lewin; Habib Saadi; James E. Peters; Aida Moreno-Moral; James C. Lee; Kenneth G. C. Smith; Enrico Petretto; Leonardo Bottolo; Sylvia Richardson (Bioinform., 2016)

MWASTools: an R/bioconductor package for metabolome-wide association studies. - Andrea Rodriguez-Martinez; Joram M. Posma; Rafael Ayala; Ana Luísa Neves; Maryam Anwar; Enrico Petretto; Costanza Emanueli; Dominique Gauguier; Jeremy K. Nicholson; Marc-Emmanuel Dumas (Bioinform., 2018)

PPMS: A framework to Profile Primary MicroRNAs from Single-cell RNA-sequencing datasets. - Jiahui Ji; Maryam Anwar; Enrico Petretto; Costanza Emanueli; Prashant Kumar Srivastava (Briefings Bioinform., 2022)

scPanel: a tool for automatic identification of sparse gene panels for generalizable patient classification using scRNA-seq datasets. - Yi Xie; Jianfei Yang; John F. Ouyang; Enrico Petretto (Briefings Bioinform., 2024)

Predicting Mutation-Disease Associations Through Protein Interactions Via Deep Learning. - Xue Li 019; Ben Cao; Jianmin Wang 016; Xiangyu Meng 005; Shuang Wang; Yu Huang 004; Enrico Petretto; Tao Song 001 (IEEE J. Biomed. Health Informatics, 2025)