DREAM-Yara: an exact read mapper for very large databases with short update time. - Temesgen Hailemariam Dadi; Enrico Siragusa; Vitor Piro; Andreas Andrusch; Enrico Seiler; Bernhard Y. Renard; Knut Reinert (Bioinform., 2018)

Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation. - Enrico Seiler; Kathrin Trappe; Bernhard Y. Renard (PLoS Comput. Biol., 2019)

ganon: precise metagenomics classification against large and up-to-date sets of reference sequences. - Vitor Piro; Temesgen Hailemariam Dadi; Enrico Seiler; Knut Reinert; Bernhard Y. Renard (Bioinform., 2020)

Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA. - Marius Knaust; Enrico Seiler; Knut Reinert; Thomas Steinke 001 (FPGA, 2022)

Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments. - Mitra Darvish; Enrico Seiler; Svenja Mehringer; René Rahn; Knut Reinert (Bioinform., 2022)