GeConT: gene context analysis. - Ricardo Ciria; Cei Abreu-Goodger; Enrique Morett; Enrique Merino (Bioinform., 2004)

RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements. - Cei Abreu-Goodger; Enrique Merino (Nucleic Acids Res., 2005)

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. - Socorro Gama-Castro; Verónica Jiménez-Jacinto; Martín Peralta-Gil; Alberto Santos-Zavaleta; Mónica I. Peñaloza-Spínola; Bruno Contreras-Moreira; Juan Segura-Salazar; Luis Muñiz-Rascado; Irma Martínez-Flores; Heladia Salgado; César Bonavides-Martínez; Cei Abreu-Goodger; et al. (Nucleic Acids Res., 2008)

GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways. - Cristian E. Martinez-Guerrero; Ricardo Ciria; Cei Abreu-Goodger; Gabriel Moreno-Hagelsieb; Enrique Merino (Nucleic Acids Res., 2008)

Bioinformatic analysis of gene regulation in Geobacter sulfurreducens. - Julia Krushkal; Yanhua Qu; Peter Brown; Sreedhar Sontineni; Toshiyuki Ueki; Katy Juarez; Ching Leang; Enrique Merino; Jeanette Peeples; Jose F. Barbe; Ronald M. Adkins; Derek R. Lovley (BMC Bioinform., 2009)

ProOpDB: Prokaryotic Operon DataBase. - Blanca Taboada; Ricardo Ciria; Cristian E. Martinez-Guerrero; Enrique Merino (Nucleic Acids Res., 2012)

Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis. - Julio A. Freyre-González; Alejandra M. Manjarrez-Casas; Enrique Merino; Mario Martinez-Nuñez; Ernesto Pérez-Rueda; Rosa-María Gutiérrez-Ríos (BMC Syst. Biol., 2013)

Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes. - Blanca Taboada; Karel Estrada; Ricardo Ciria; Enrique Merino (Bioinform., 2018)