GeConT: gene context analysis. - Ricardo Ciria; Cei Abreu-Goodger; Enrique Morett; Enrique Merino (Bioinform., 2004)

Fuzzy C-means for inferring functional coupling of proteins from their phylogenetic profiles. - Juan Carlos Fernandez; Edgar E. Vallejo; Enrique Morett (CIBCB, 2006)

Inferring functional coupling of proteins using the Evolutionary Bond Energy Algorithm. - Ryosuke Watanabe; Edgar E. Vallejo; Enrique Morett (CIBCB, 2006)

Ancestral DNA Sequence Reconstruction Using Recursive Genetic Algorithms. - Mauricio Martínez; Edgar E. Vallejo; Enrique Morett (ACAL, 2007)

Inferring modules of functionally interacting proteins using the Bond Energy Algorithm. - Ryosuke Watanabe; Enrique Morett; Edgar E. Vallejo (BMC Bioinform., 2008)

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. - Socorro Gama-Castro; Verónica Jiménez-Jacinto; Martín Peralta-Gil; Alberto Santos-Zavaleta; Mónica I. Peñaloza-Spínola; Bruno Contreras-Moreira; Juan Segura-Salazar; Luis Muñiz-Rascado; Irma Martínez-Flores; Heladia Salgado; César Bonavides-Martínez; Cei Abreu-Goodger; et al. (Nucleic Acids Res., 2008)

MOCEA: a multi-objective clustering evolutionary algorithm for inferring protein-protein functional interactions. - José Juan Tapia; Edgar E. Vallejo; Enrique Morett (GECCO, 2009)

A Clustering Genetic Algorithm for Genomic Data Mining. - José Juan Tapia; Enrique Morett; Edgar E. Vallejo (Foundations of Computational Intelligence (4), 2009)

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). - Socorro Gama-Castro; Heladia Salgado; Martín Peralta-Gil; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Hilda Solano-Lira; Verónica Jiménez-Jacinto; Verena Weiss; Jair S. García-Sotelo; Alejandra López-Fuentes; Liliana Porrón-Sotelo; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2011)

Evidence classification of high-throughput protocols and confidence integration in RegulonDB. - Verena Weiss; Alejandra Medina-Rivera; Araceli M. Huerta; Alberto Santos-Zavaleta; Heladia Salgado; Enrique Morett; Julio Collado-Vides (Database J. Biol. Databases Curation, 2013)

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. - Heladia Salgado; Martín Peralta-Gil; Socorro Gama-Castro; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Jair S. García-Sotelo; Verena Weiss; Hilda Solano-Lira; Irma Martínez-Flores; Alejandra Medina-Rivera; Gerardo Salgado-Osorio; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2013)