A Pascal microcomputer program for prediction of protein secondary structure and hydropathic segments. - Armando Parrilla; Amadeo Doménech; Enrique Querol (Comput. Appl. Biosci., 1986)

An Excel spreadsheet computer program combining algorithms for prediction of protein structural characteristics. - J. Clotet; Juan Cedano; Enrique Querol (Comput. Appl. Biosci., 1994)

'TransMem': a neural network implemented in Excel spreadsheets for predicting transmembrane domains of proteins. - Patrick Aloy; Juan Cedano; Baldomero Oliva; Francesc X. Avilés; Enrique Querol (Comput. Appl. Biosci., 1997)

A Computational System for Modeling Flexible Protein-Protein and protein-DNA Docking. - Michael J. E. Sternberg; Patrick Aloy; Henry A. Gabb; Richard M. Jackson; Gidon Moont; Enrique Querol; Francesc X. Avilés (ISMB, 1998)

ASAP: analysis of peptide composition. - Xavier Serra-Hartmann; Xavier Rebordosa; Jaume Piñol; Enrique Querol; Marc A. Martí-Renom (Bioinform., 2000)

Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2. - Patrick Aloy; José M. Mas; Marc A. Martí-Renom; Enrique Querol; Francesc X. Avilés; Baldomero Oliva (J. Comput. Aided Mol. Des., 2000)

Classification of protein disulphide-bridge topologies. - José M. Mas; Patrick Aloy; Marc A. Martí-Renom; Baldomero Oliva; R. de Llorens; Francesc X. Avilés; Enrique Querol (J. Comput. Aided Mol. Des., 2001)

TranScout: prediction of gene expression regulatory proteins from their sequences. - Daniel Aguilar; Baldomero Oliva; Francesc X. Avilés; Enrique Querol (Bioinform., 2002)

SNOW: Standard NOmenclature Wizard to help searching for (bio) chemical standardized names. - Daniel Aguilar; Baldomero Oliva; Francesc X. Avilés; Enrique Querol (Bioinform., 2003)

Do Current Sequence Analysis Algorithms Disclose Multifunctional (moonlighting) Proteins?. - Antonio Gómez Moruno; Núria Domedel-Puig; Juan Cedano; Jaume Piñol; Enrique Querol (Bioinform., 2003)

ArchDB: automated protein loop classification as a tool for structural genomics. - Jordi Espadaler; Narcis Fernandez-Fuentes; Antonio Hermoso; Enrique Querol; Francesc X. Avilés; Michael J. E. Sternberg; Baldomero Oliva (Nucleic Acids Res., 2004)

TrSDB: a proteome database of transcription factors. - Antonio Hermoso; Daniel Aguilar; Francesc X. Avilés; Enrique Querol (Nucleic Acids Res., 2004)

Identification of function-associated loop motifs and application to protein function prediction. - Jordi Espadaler; Enrique Querol; Francesc X. Avilés; Baldo Oliva (Bioinform., 2006)

A web server for automatic analysis and extraction of relevant biological knowledge. - Juan Cedano; Mario Huerta; Irene Estrada; Frederic Ballllosera; Oscar Conchillo; Pedro Delicado; Enrique Querol (Comput. Biol. Medicine, 2007)

NCR-PCOPGene: An Exploratory Tool for Analysis of Sample-Classes Effect on Gene-Expression Relationships. - Juan Cedano; Mario Huerta; Enrique Querol (Adv. Bioinformatics, 2008)

Prediction of enzyme function by combining sequence similarity and protein interactions. - Jordi Espadaler; Narayanan Eswar; Enrique Querol; Francesc X. Avilés; Andrej Sali; Marc A. Martí-Renom; Baldomero Oliva (BMC Bioinform., 2008)

Analysis of Nonlinear Relations between Expression Profiles by the Principal Curves of Oriented-Points Approach. - Mario Huerta; Juan Cedano; Enrique Querol (J. Bioinform. Comput. Biol., 2008)

PCOPGene-Net: Holistic Characterisation of cellular states from microarray data based on continuous and non-continuous analysis of gene-expression relationships. - Mario Huerta; Juan Cedano; Dario Peña; Antonio Rodriguez; Enrique Querol (BMC Bioinform., 2009)

Gene Ontology Function prediction in Mollicutes using Protein-Protein Association Networks. - Antonio Gómez Moruno; Juan Cedano; Isaac Amela; Antoni Planas; Jaume Piñol; Enrique Querol (BMC Syst. Biol., 2011)

MultitaskProtDB: a database of multitasking proteins. - Sergio Hernández; Gabriela Ferragut; Isaac Amela; JosepAntoni Perez-Pons; Jaume Piñol; Angel Mozo-Villarias; Juan Cedano; Enrique Querol (Nucleic Acids Res., 2014)

MultitaskProtDB-II: an update of a database of multitasking/moonlighting proteins. - Luís Franco-Serrano; Sergio Hernández; Alejandra Calvo; María A. Severi; Gabriela Ferragut; JosepAntoni Perez-Pons; Jaume Piñol; Òscar Pich; Angel Mozo-Villarias; Isaac Amela; Enrique Querol; Juan Cedano (Nucleic Acids Res., 2018)