Quantifying Robustness in a Spatial Model of Metabolism-Boundary Co-Construction. - Eran Agmon; Alexander J. Gates; Valentin Churavy; Randall D. Beer (ALIFE, 2014)

The evolution and analysis of action switching in embodied agents. - Eran Agmon; Randall D. Beer (Adapt. Behav., 2014)

Ontogeny and adaptivity in a model protocell. - Eran Agmon; Alexander J. Gates; Randall D. Beer (ECAL, 2015)

The Structure of Ontogenies in a Model Protocell. - Eran Agmon; Alexander J. Gates; Randall D. Beer (Artif. Life, 2016)

Exploring the Space of Viable Configurations in a Model of Metabolism-Boundary Co-construction. - Eran Agmon; Alexander J. Gates; Valentin Churavy; Randall D. Beer (Artif. Life, 2016)

Open-Ended Evolution: Perspectives from the OEE Workshop in York. - Tim Taylor 001; Mark A. Bedau; Alastair Channon; David H. Ackley; Wolfgang Banzhaf; Guillaume Beslon; Emily L. Dolson; Tom Froese; Simon J. Hickinbotham; Takashi Ikegami; Barry McMullin; Norman H. Packard; et al. (Artif. Life, 2016)

Structural coupling of a Potts model cell. - Eran Agmon; James A. Glazier; Randall D. Beer (ECAL, 2017)

Lineage selection leads to evolvability at large population sizes. - Nathaniel Virgo; Eran Agmon; Chrisantha Fernando (ECAL, 2017)

The Biological Foundations of Enactivism: A Report on a Workshop Held at Artificial Life XV. - Eran Agmon; Matthew D. Egbert; Nathaniel Virgo (Artif. Life, 2018)

Deriving the bodily grounding of living beings with molecular autopoiesis. - Eran Agmon (Adapt. Behav., 2020)

A Multi-Scale Approach to Modeling E. coli Chemotaxis. - Eran Agmon; Ryan K. Spangler (Entropy, 2020)

Vivarium: an interface and engine for integrative multiscale modeling in computational biology. - Eran Agmon; Ryan K. Spangler; Christopher J. Skalnik; William Poole; Shayn M. Peirce; Jerry H. Morrison; Markus W. Covert (Bioinform., 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses. - Christopher J. Skalnik; Sean Y. Cheah; Mica Y. Yang; Mattheus B. Wolff; Ryan K. Spangler; Lee Talman; Jerry H. Morrison; Shayn M. Peirce; Eran Agmon; Markus W. Covert (PLoS Comput. Biol., 2023)