Selecton: a server for detecting evolutionary forces at a single amino-acid site. - Adi Doron-Faigenboim; Adi Stern; Itay Mayrose; Eran Bacharach; Tal Pupko (Bioinform., 2005)

Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates. - Itay Mayrose; Adi Doron-Faigenboim; Eran Bacharach; Tal Pupko (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach. - Adi Stern; Adi Doron-Faigenboim; Elana Erez; Eric Martz; Eran Bacharach; Tal Pupko (Nucleic Acids Res., 2007)

Evolutionary Modeling of Rate Shifts Reveals Specificity Determinants in HIV-1 Subtypes. - Osnat Penn; Adi Stern; Nimrod D. Rubinstein; Julien Dutheil; Eran Bacharach; Nicolas Galtier; Tal Pupko (PLoS Comput. Biol., 2008)