HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data. - Erdogan Taskesen; Renee Beekman; Jeroen de Ridder; Bas J. Wouters; Justine K. Peeters; Ivo P. Touw; Marcel J. T. Reinders; Ruud Delwel (BMC Bioinform., 2010)

Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia. - Erdogan Taskesen; Sepideh Babaei; Marcel J. T. Reinders; Jeroen de Ridder (BMC Bioinform., 2015)

An integrated approach of gene expression and DNA-methylation profiles of WNT signaling genes uncovers novel prognostic markers in Acute Myeloid Leukemia. - Erdogan Taskesen; Frank J. T. Staal; Marcel J. T. Reinders (BMC Bioinform., 2015)

HNet: Graphical Hypergeometric Networks. - Erdogan Taskesen (CoRR, 2020)