Direct use of information extraction from scientific text for modeling and simulation in the life sciences. - Martin Hofmann-Apitius; Erfan Younesi; Vinod Kasam (Libr. Hi Tech, 2009)

PLIO: an ontology for formal description of protein-ligand interactions. - Olga Ivchenko; Erfan Younesi; Mohammad Shahid; Antje Wolf; Bernd Müller; Martin Hofmann-Apitius (Bioinform., 2011)

Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data. - Benedikt Zacher; Khalid Abnaof; Stephan Gade; Erfan Younesi; Achim Tresch; Holger Fröhlich (Bioinform., 2012)

Mining biomarker information in biomedical literature. - Erfan Younesi; Luca Toldo; Bernd Müller; Christoph M. Friedrich; Natalia Novac; Alexander Scheer; Martin Hofmann-Apitius; Juliane Fluck (BMC Medical Informatics Decis. Mak., 2012)

HuPSON: the human physiology simulation ontology. - Michaela Gündel; Erfan Younesi; Ashutosh Malhotra; Jiali Wang; Hui Li; Bijun Zhang; Bernard de Bono; Heinz-Theodor Mevissen; Martin Hofmann-Apitius (J. Biomed. Semant., 2013)

'HypothesisFinder: ' A Strategy for the Detection of Speculative Statements in Scientific Text. - Ashutosh Malhotra; Erfan Younesi; Harsha Gurulingappa; Martin Hofmann-Apitius (PLoS Comput. Biol., 2013)

CSEO - the Cigarette Smoke Exposure Ontology. - Erfan Younesi; Sam Ansari; Michaela Gündel; Shiva Ahmadi; Chris Coggins; Julia Hoeng; Martin Hofmann-Apitius; Manuel C. Peitsch (J. Biomed. Semant., 2014)

Introducing the disease and phenotype OAEI track. - Ian Harrow; Ernesto Jiménez-Ruiz; Andrea Splendiani; Martin Romacker; Stefan Negru; Peter Woollard; Scott Markel; Yasmin Alam-Faruque; Martin Koch 001; Erfan Younesi; James Malone (OM@ISWC, 2016)

Ontologies Guidelines for Best Practice and a Process to Evaluate Existing Ontologies Mapping Tools and Algorithms. - Ian Harrow; Martin Romacker; Andrea Splendiani; Stefan Negru; Peter Woollard; Scott Markel; Yasmin Alam-Faruque; Martin Koch 001; Erfan Younesi; James Malone; Ernesto Jiménez-Ruiz (ISWC (Posters & Demos), 2016)

Ontologies Guidelines and Evaluation of Ontologies Mapping Tools and Algorithms. - Ian Harrow; Martin Romacker; Andrea Splendiani; Stefan Negru; Peter Woollard; Scott Markel; Yasmin Alam-Faruque; Martin Koch 001; Erfan Younesi; James Malone; Ernesto Jiménez-Ruiz (SWAT4LS, 2016)