Graphical user interface system for automatic 3-D medical image analysis. - Gopal Sundaramoorthy; William E. Higgins; John Hoford; Eric A. Hoffman (CBMS, 1992)

A physically based model for the registration of a 2D image sequence. - Jiang Qian; Theophano Mitsa; Eric A. Hoffman (ICASSP, 1996)

Fuzzy logic approach to extraction of intrathoracic airway trees from three-dimensional CT images. - Wonkyu Park; Eric A. Hoffman; Milan Sonka (Image Processing, 1996)

Rule-based detection of intrathoracic airway trees. - Milan Sonka; Wonkyu Park; Eric A. Hoffman (IEEE Trans. Medical Imaging, 1996)

Accurate Measurement of Intrathoracic Airways. - Joseph M. Reinhardt; N. D. D'Souza; Eric A. Hoffman (IEEE Trans. Medical Imaging, 1997)

Segmentation of Intrathoracic Airway Trees: A Fuzzy Logic Approach. - Wonkyu Park; Eric A. Hoffman; Milan Sonka (IEEE Trans. Medical Imaging, 1998)

Image-guided endoscopy for lung-cancer assessment. - James P. Helferty; Anthony J. Sherbondy; Atilla Peter Kiraly; Janice Z. Turlington; Eric A. Hoffman; Geoffrey McLennan; William E. Higgins (ICIP (2), 2001)

Integrated System for Objective Assessment of Global and Regional Lung Structure. - Joseph M. Reinhardt; Junfeng Guo; Li Zhang; D. Bilgen; Shiying Hu; R. Uppaluri; Ryan M. Long; O. I. Saba; Geoffrey McLennan; Milan Sonka; Eric A. Hoffman (MICCAI, 2001)

Automatic Lung Segmentation for Accurate Quantitation of Volumetric X-ray CT Images. - Shiying Hu; Eric A. Hoffman; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2001)

Integrated system for CT-based assessment of parenchymal lung disease. - Junfeng Guo; Joseph M. Reinhardt; Hiroko Kitaoka; Li Zhang; Milan Sonka; Geoffrey McLennan; Eric A. Hoffman (ISBI, 2002)

Cone-beam reconstruction for Micro-CT. - Ge Wang 001; Ming Jiang 001; Seung Wook Lee; Hong Liu; Eric A. Hoffman (ISBI, 2002)

Automated Nomenclature Labeling of the Bronchial Tree in 3D-CT Lung Images. - Hiroko Kitaoka; Yongsup Park; Juerg Tschirren; Joseph M. Reinhardt; Milan Sonka; Geoffrey McLennan; Eric A. Hoffman (MICCAI (2), 2002)

Segmentation, Skeletonization, and Branchpoint Matching - A Fully Automated Quantitative Evaluation of Human Intrathoracic Airway Trees. - Juerg Tschirren; Kálmán Palágyi; Joseph M. Reinhardt; Eric A. Hoffman; Milan Sonka (MICCAI (2), 2002)

Segmentation and Analysis of the Human Airway Tree from 3D X-ray CT Images. - Deniz Aykac; Eric A. Hoffman; Geoffrey McLennan; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2003)

Assessment of Intrathoracic Airway Trees: Methods and In Vivo Validation. - Kálmán Palágyi; Juerg Tschirren; Eric A. Hoffman; Milan Sonka (ECCV Workshops CVAMIA and MMBIA, 2004)

Regional Lung Ventilation from Volumetric CT Scans Using Image Warping Functions. - Smita Krishnan; Kenneth Beck; Joseph M. Reinhardt; Katherine Carlson; Eric A. Hoffman; Brett Simon; Richard Albert (ISBI, 2004)

Computerized detection of pulmonary nodules using cellular neural networks in CT images. - Xiangwei Zhang; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Image Processing, 2004)

Three-dimensional path planning for virtual bronchoscopy. - Atilla P. Kiraly; James P. Helferty; Eric A. Hoffman; Geoffrey McLennan; William E. Higgins (IEEE Trans. Medical Imaging, 2004)

Automated Detection of Small-Size Pulmonary Nodules Based on Helical CT Images. - Xiangwei Zhang; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (IPMI, 2005)

Image-guided simulation for bioluminescence tomographic imaging. - Kumar Durairaj; Wenxiang Cong; Jacqueline Thiesse; Earl Nixon; John Meinel; Alexander X. Cong; Geoffrey McLennan; Eric A. Hoffman; Jiang Ming 001; Ge Wang 001 (Image-Guided Procedures, 2005)

3D pulmonary airway color image reconstruction via shape from shading and virtual bronchoscopy imaging techniques. - Melissa J. Suter; Joseph M. Reinhardt; Eric A. Hoffman; Geoffrey McLennan (Image Processing, 2005)

Automatic lung lobe segmentation in x-ray CT images by 3D watershed transform using anatomic information from the segmented airway tree. - Soumik Ukil; Eric A. Hoffman; Joseph M. Reinhardt (Image Processing, 2005)

A complete CAD system for pulmonary nodule detection in high resolution CT images. - Xiangwei Zhang; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Image Processing, 2005)

3D segmentation of non-isolated pulmonary nodules in high resolution CT images. - Xiangwei Zhang; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Image Processing, 2005)

Intrathoracic airway trees: segmentation and airway morphology analysis from low-dose CT scans. - Juerg Tschirren; Eric A. Hoffman; Geoffrey McLennan; Milan Sonka (IEEE Trans. Medical Imaging, 2005)

Matching and anatomical labeling of human airway tree. - Juerg Tschirren; Geoffrey McLennan; Kálmán Palágyi; Eric A. Hoffman; Milan Sonka (IEEE Trans. Medical Imaging, 2005)

BICIR: Boundary-Constrained Inverse Consistent Image Registration Using WEB-Splines. - Dinesh K. Kumar; Xiujuan Geng; Eric A. Hoffman; Gary E. Christensen (CVPR Workshops, 2006)

Establishing multi-modality datasets with the incorporation of 3D histopathology for soft tissue classification. - Jessica de Ryk; Jacqueline Thiesse; Joseph M. Reinhardt; Eric A. Hoffman; Geoffrey McLennan (Image Processing, 2006)

Computerized detection of pulmonary nodules using a combination of 3D global and local shape information based on helical CT images. - Xiangwei Zhang; Jonathan Stoeckel; Matthias Wolf 001; Pascal Cathier; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Image Processing, 2006)

Quantitative analysis of pulmonary airway tree structures. - Kálmán Palágyi; Juerg Tschirren; Eric A. Hoffman; Milan Sonka (Comput. Biol. Medicine, 2006)

MDCT-based 3-D texture classification of emphysema and early smoking related lung pathologies. - Ye Xu; Milan Sonka; Geoffrey McLennan; Junfeng Guo; Eric A. Hoffman (IEEE Trans. Medical Imaging, 2006)

Atlas-driven lung lobe segmentation in volumetric X-ray CT images. - Li Zhang; Eric A. Hoffman; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2006)

Registration-Derived Estimates of Local Lung Expansion as Surrogates for Regional Ventilation. - Joseph M. Reinhardt; Gary E. Christensen; Eric A. Hoffman; Kai Ding 003; Kunlin Cao (IPMI, 2007)

Pulmonary CT Image Analysis and Computer Aided Detection. - Milan Sonka; Juerg Tschirren; Soumik Ukil; X. Zhang; Ye Xu; Joseph M. Reinhardt; Edwin J. R. van Beek; Geoffrey McLennan; Eric A. Hoffman (ISBI, 2007)

The Lung Image Database Consortium (LIDC): a quality assurance model for the collection of expert-defined truth in lung-nodule-based image analysis studies. - Samuel G. Armato; Rachael Y. Roberts; Geoffrey McLennan; Michael F. McNitt-Gray; David F. Yankelevitz; Ella A. Kazerooni; Edwin J. R. van Beek; Heber MacMahon; Denise R. Aberle; Charles R. Meyer; Anthony P. Reeves; Claudia I. Henschke; et al. (Computer-Aided Diagnosis, 2007)

The Lung Image Database Consortium (LIDC): pulmonary nodule measurements, the variation, and the difference between different size metrics. - Anthony P. Reeves; Alberto M. Biancardi; Tatiyana V. Apanasovich; Charles R. Meyer; Heber MacMahon; Edwin J. R. van Beek; Ella A. Kazerooni; David F. Yankelevitz; Michael F. McNitt-Gray; Geoffrey McLennan; Samuel G. Armato; Denise R. Aberle; et al. (Computer-Aided Diagnosis, 2007)

A New Method for Spherical Object Detection and Its Application to Computer Aided Detection of Pulmonary Nodules in CT Images. - Xiangwei Zhang; Jonathan Stoeckel; Matthias Wolf 001; Pascal Cathier; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (MICCAI (1), 2007)

Three-dimensional histopathology of lung cancer with multimodality image registration. - Jessica de Ryk; Jamie Weydert; Gary E. Christensen; Jacqueline Thiesse; Eman Namati; Joseph M. Reinhardt; Eric A. Hoffman; Geoffrey McLennan (Image Processing, 2007)

Registration-based estimates of local lung tissue expansion compared to xenon CT measures of specific ventilation. - Joseph M. Reinhardt; Kai Ding 003; Kunlin Cao; Gary E. Christensen; Eric A. Hoffman; Shalmali V. Bodas (Medical Image Anal., 2008)

Evaluation of Lobar Biomechanics during Respiration Using Image Registration. - Kai Ding 003; Youbing Yin; Kunlin Cao; Gary E. Christensen; Ching-Long Lin; Eric A. Hoffman; Joseph M. Reinhardt (MICCAI (1), 2009)

A novel multiscale topo-morphometric approach for separating arteries and veins via pulmonary CT imaging. - Punam K. Saha; Zhiyun Gao; Sara K. Alford; Milan Sonka; Eric A. Hoffman (Image Processing, 2009)

Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images. - Hidenori Shikata; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Int. J. Biomed. Imaging, 2009)

Multi-scale Topo-morphometric Opening of Arteries and Veins: An Evaluative Study via Pulmonary CT Imaging. - Zhiyun Gao; Colin Holtze; Randall Grout; Milan Sonka; Eric A. Hoffman; Punam K. Saha (ISVC (3), 2010)

Lung Lobar Slippage Assessed with the Aid of Image Registration. - Youbing Yin; Eric A. Hoffman; Ching-Long Lin (MICCAI (2), 2010)

Multiscale topo-morphologic opening of arteries and veins: a validation study on phantoms and CT imaging of pulmonary vessel casting of pigs. - Zhiyun Gao; Colin Holtze; Milan Sonka; Eric A. Hoffman; Punam K. Saha (Image Processing, 2010)

Computer-aided diagnosis of radiographic patterns of lung disease via MDCT images. - Ye Xu; Edwin J. R. van Beek; Kevin R. Flaherty; Ella A. Kazerooni; Eric A. Hoffman (Int. J. Comput. Sci. Eng., 2010)

Topomorphologic Separation of Fused Isointensity Objects via Multiscale Opening: Separating Arteries and Veins in 3-D Pulmonary CT. - Punam K. Saha; Zhiyun Gao; Sara K. Alford; Milan Sonka; Eric A. Hoffman (IEEE Trans. Medical Imaging, 2010)

Segmentation of pathological and diseased lung tissue in CT images using a graph-search algorithm. - Panfang Hua; Qi Song 001; Milan Sonka; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2011)

Statistical Interior Tomography. - Qiong Xu; Xuanqin Mou; Ge Wang 001; Jered Sieren; Eric A. Hoffman; Hengyong Yu (IEEE Trans. Medical Imaging, 2011)

An in-vivo computed tomography approach for quantifying porcine pulmonary arterial morphometry. - Yik Ching Lee; Alys R. Clark; Matthew Fuld; Susan Haynes; Abhay Divekar; Eric A. Hoffman; Merryn H. Tawhai (EMBC, 2012)

Quantifying tissue heterogeneity using quadtree decomposition. - Karthik Subramaniam; Eric A. Hoffman; Merryn H. Tawhai (EMBC, 2012)

Tensor scale-based anisotropic region growing for segmentation of elongated biological structures. - Ziyue Xu 001; Zhiyun Gao; Eric A. Hoffman; Punam K. Saha (ISBI, 2012)

Multilevel tree analysis of pulmonary artery/vein trees in noncontrast CT images. - Zhiyun Gao; Randall Grout; Eric A. Hoffman; Punam K. Saha (Image Processing, 2012)

Tracking Regional Tissue Volume and Function Change in Lung Using Image Registration. - Kunlin Cao; Gary E. Christensen; Kai Ding 003; Kaifang Du; Madhavan L. Raghavan; Ryan E. Amelon; Kimberly M. Baker; Eric A. Hoffman; Joseph M. Reinhardt (Int. J. Biomed. Imaging, 2012)

A New Paradigm of Interactive Artery/Vein Separation in Noncontrast Pulmonary CT Imaging Using Multiscale Topomorphologic Opening. - Zhiyun Gao; Randall Grout; Colin Holtze; Eric A. Hoffman; Punam K. Saha (IEEE Trans. Biomed. Eng., 2012)

Extraction of Airways From CT (EXACT'09). - Pechin Lo; Bram van Ginneken; Joseph M. Reinhardt; Tarunashree Yavarna; Pim A. de Jong; Benjamin Irving; Catalin I. Fetita; Margarete Ortner; Romulo Pinho; Jan Sijbers; Marco Feuerstein; Anna Fabijanska; et al. (IEEE Trans. Medical Imaging, 2012)

Robust quantification of pulmonary emphysema with a Hidden Markov Measure Field model. - Yrjö Tapio Hame; Elsa D. Angelini; Eric A. Hoffman; R. Graham Barr; Andrew F. Laine (ISBI, 2013)

A multiscale MDCT image-based breathing lung model with time-varying regional ventilation. - Youbing Yin; Jiwoong Choi; Eric A. Hoffman; Merryn H. Tawhai; Ching-Long Lin (J. Comput. Phys., 2013)

Optimal Graph Search Based Segmentation of Airway Tree Double Surfaces Across Bifurcations. - Xiaomin Liu; Danny Z. Chen; Merryn H. Tawhai; Xiaodong Wu 001; Eric A. Hoffman; Milan Sonka (IEEE Trans. Medical Imaging, 2013)

A New Approach of Arc Skeletonization for Tree-like Objects Using Minimum Cost Path. - Dakai Jin; Krishna S. Iyer; Eric A. Hoffman; Punam K. Saha (ICPR, 2014)

Automated Assessment of Pulmonary Arterial Morphology in Multi-row Detector CT Imaging Using Correspondence with Anatomic Airway Branches. - Dakai Jin; Krishna S. Iyer; Eric A. Hoffman; Punam K. Saha (ISVC (1), 2014)

Adaptive Quantification and Longitudinal Analysis of Pulmonary Emphysema With a Hidden Markov Measure Field Model. - Yrjö Tapio Hame; Elsa D. Angelini; Eric A. Hoffman; R. Graham Barr; Andrew F. Laine (IEEE Trans. Medical Imaging, 2014)

Multi-scale Opening - A New Morphological Operator. - Subhadip Basu; Eric A. Hoffman; Punam K. Saha (ICIAP (2), 2015)

Sparse sampling and unsupervised learning of lung texture patterns in pulmonary emphysema: MESA COPD study. - Yrjö Tapio Hame; Elsa D. Angelini; Megha A. Parikh; Benjamin M. Smith; Eric A. Hoffman; R. Graham Barr; Andrew F. Laine (ISBI, 2015)

A Novel Iterative Method for Airway Tree Segmentation from CT Imaging Using Multiscale Leakage Detection. - Syed Ahmed Nadeem; Dakai Jin; Eric A. Hoffman; Punam K. Saha (ACCV Workshops (3), 2016)

A semi-automatic framework of measuring pulmonary arterial metrics at anatomic airway locations using CT imaging. - Dakai Jin; Junfeng Guo; Timothy M. Dougherty; Krishna S. Iyer; Eric A. Hoffman; Punam K. Saha (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Emphysema Quantification on Cardiac CT Scans Using Hidden Markov Measure Field Model: The MESA Lung Study. - Jie Yang 041; Elsa D. Angelini; Pallavi P. Balte; Eric A. Hoffman; Colin O. Wu; Bharath A. Venkatesh; R. Graham Barr; Andrew F. Laine (MICCAI (2), 2016)

Explaining Radiological Emphysema Subtypes with Unsupervised Texture Prototypes: MESA COPD Study. - Jie Yang 041; Elsa D. Angelini; Benjamin M. Smith; John H. M. Austin; Eric A. Hoffman; David A. Bluemke; R. Graham Barr; Andrew F. Laine (MCV/BAMBI@MICCAI, 2016)

A 4DCT imaging-based breathing lung model with relative hysteresis. - Shinjiro Miyawaki; Sanghun Choi; Eric A. Hoffman; Ching-Long Lin (J. Comput. Phys., 2016)

A robust and efficient curve skeletonization algorithm for tree-like objects using minimum cost paths. - Dakai Jin; Krishna S. Iyer; Cheng Chen 016; Eric A. Hoffman; Punam K. Saha (Pattern Recognit. Lett., 2016)

Multiscale Opening of Conjoined Fuzzy Objects: Theory and Applications. - Punam K. Saha; Subhadip Basu; Eric A. Hoffman (IEEE Trans. Fuzzy Syst., 2016)

Path-Gradient - A Theory of Computing Full Intensity-Transition Between Two Points. - Syed Ahmed Nadeem; Eric A. Hoffman; Punam K. Saha (CIARP, 2017)

Novel Theory and Algorithms of Path-Gradient and Their Application to Image Segmentation. - Syed Ahmed Nadeem; Eric A. Hoffman; Punam K. Saha (ICAPR, 2017)

Generative method to discover emphysema subtypes with unsupervised learning using lung macroscopic patterns (LMPS): The MESA COPD study. - Jingkuan Song; Jie Yang 041; Benjamin M. Smith; Pallavi P. Balte; Eric A. Hoffman; R. Graham Barr; Andrew F. Laine; Elsa D. Angelini (ISBI, 2017)

Unsupervised Discovery of Spatially-Informed Lung Texture Patterns for Pulmonary Emphysema: The MESA COPD Study. - Jie Yang 041; Elsa D. Angelini; Pallavi P. Balte; Eric A. Hoffman; John H. M. Austin; Benjamin M. Smith; Jingkuan Song; R. Graham Barr; Andrew F. Laine (MICCAI (1), 2017)

An iterative method for airway segmentation using multiscale leakage detection. - Syed Ahmed Nadeem; Dakai Jin; Eric A. Hoffman; Punam K. Saha (Image Processing, 2017)

Frequency-Selective Computed Tomography: Applications During Periodic Thoracic Motion. - Jacob Herrmann; Eric A. Hoffman; David W. Kaczka (IEEE Trans. Medical Imaging, 2017)

An automated airway segmentation algorithm for CT images using topological leakage detection and volume freezing. - Syed Ahmed Nadeem; Eric A. Hoffman; Punam K. Saha (ICPR, 2018)

Topological leakage detection and freeze-and-grow propagation for improved CT-based airway segmentation. - Syed Ahmed Nadeem; Eric A. Hoffman; Jered P. Sieren; Punam K. Saha (Image Processing, 2018)

A GPU-based symmetric non-rigid image registration method in human lung. - Babak Haghighi; Nathan D. Ellingwood; Youbing Yin; Eric A. Hoffman; Ching-Long Lin (Medical Biol. Eng. Comput., 2018)

Enhanced Generative Model for Unsupervised Discovery of Spatially-Informed Macroscopic Emphysema: The Mesa Copd Study. - Yu Gan 003; Jie Yang 041; Benjamin M. Smith; Pallavi P. Balte; Eric A. Hoffman; Christine P. Hendon; R. Graham Barr; Andrew F. Laine; Elsa D. Angelini (ISBI, 2019)

A fully automated CT-based airway segmentation algorithm using deep learning and topological leakage detection and branch augmentation approaches. - Syed Ahmed Nadeem; Eric A. Hoffman; Punam K. Saha (Image Processing, 2019)

Pulmonary lobar segmentation from computed tomography scans based on a statistical finite element analysis of lobe shape. - Yuwen Zhang; Mahyar Osanlouy; Alys R. Clark; Hari Kumar; Clair King; Margaret L. Wilsher; David G. Milne; Eric A. Hoffman; Merryn H. Tawhai (Image Processing, 2019)

Automatic Quantification of Pulmonary Fissure Integrity: A Repeatability Analysis. - Zachary W. Althof; Sarah E. Gerard; Yue Pan; Gary E. Christensen; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2020)

Locally Adaptive Half-Max Methods for Airway Lumen-Area and Wall-Thickness and Their Repeat CT Scan Reproducibility. - Syed Ahmed Nadeem; Eric A. Hoffman; Alejandro P. Comellas; Punam K. Saha (ISBI, 2020)

Assessment of Lung Biomechanics in COPD Using Image Registration. - Yue Pan; Gary E. Christensen; Oguz C. Durumeric; Sarah E. Gerard; Surya P. Bhatt; R. Graham Barr; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2020)

Registration-Invariant Biomechanical Features for Disease Staging of COPD in SPIROMICS. - Muhammad F. A. Chaudhary; Yue Pan; Di Wang; Sandeep Bodduluri; Surya P. Bhatt; Alejandro P. Comellas; Eric A. Hoffman; Gary E. Christensen; Joseph M. Reinhardt (TIA@MICCAI, 2020)

Anatomical labeling of human airway branches using a novel two-step machine learning and hierarchical features. - Syed Ahmed Nadeem; Eric A. Hoffman; Alejandro P. Comellas; Punam K. Saha (Image Processing, 2020)

Novel Subtypes of Pulmonary Emphysema Based on Spatially-Informed Lung Texture Learning. - Jie Yang 041; Elsa D. Angelini; Pallavi P. Balte; Eric A. Hoffman; John H. M. Austin; Benjamin M. Smith; R. Graham Barr; Andrew F. Laine (CoRR, 2020)

CT Image Segmentation for Inflamed and Fibrotic Lungs Using a Multi-Resolution Convolutional Neural Network. - Sarah E. Gerard; Jacob Herrmann; Yi Xin; Kevin T. Martin; Emanuele Rezoagli; Davide Ippolito; Giacomo Bellani; Maurizio Cereda; Junfeng Guo; Eric A. Hoffman; David W. Kaczka; Joseph M. Reinhardt (CoRR, 2020)

CT Super-Resolution GAN Constrained by the Identical, Residual, and Cycle Learning Ensemble (GAN-CIRCLE). - Chenyu You; Wenxiang Cong; Michael W. Vannier; Punam K. Saha; Eric A. Hoffman; Ge Wang 001; Guang Li 011; Yi Zhang 018; Xiaoliu Zhang; Hongming Shan; Mengzhou Li; Shenghong Ju; et al. (IEEE Trans. Medical Imaging, 2020)

Unsupervised Clustering Of Airway Tree Structures On High-Resolution CT: The Mesa Lung Study. - Artur Wysoczanski; Elsa D. Angelini; Benjamin M. Smith; Eric A. Hoffman; Grant T. Hiura; Yifei Sun; R. Graham Barr; Andrew F. Laine (ISBI, 2021)

Generalizability of a deep learning airway segmentation algorithm to a blinded low-dose CT dataset. - Syed Ahmed Nadeem; Alejandro P. Comellas; Eric A. Hoffman; Punam K. Saha (Image Processing, 2021)

Recursive Refinement Network for Deformable Lung Registration between Exhale and Inhale CT Scans. - Xinzi He; Jia Guo; Xuzhe Zhang; Hanwen Bi; Sarah E. Gerard; David W. Kaczka; Amin Motahari; Eric A. Hoffman; Joseph M. Reinhardt; R. Graham Barr; Elsa D. Angelini; Andrew Laine (CoRR, 2021)

Regional Lung Perfusion Analysis in Experimental ARDS by Electrical Impedance and Computed Tomography. - Michael Kircher; Gunnar Elke; Birgit Stender; María Hernández Mesa; Felix Schuderer; Olaf Dössel; Matthew Fuld; Ahmed F. Halaweish; Eric A. Hoffman; Norbert Weiler; Inéz Frerichs (IEEE Trans. Medical Imaging, 2021)

A CT-Based Automated Algorithm for Airway Segmentation Using Freeze-and-Grow Propagation and Deep Learning. - Syed Ahmed Nadeem; Eric A. Hoffman; Jessica C. Sieren; Alejandro P. Comellas; Surya P. Bhatt; Igor Z. Barjaktarevic; Fereidoun Abtin; Punam K. Saha (IEEE Trans. Medical Imaging, 2021)

Novel Subtypes of Pulmonary Emphysema Based on Spatially-Informed Lung Texture Learning: The Multi-Ethnic Study of Atherosclerosis (MESA) COPD Study. - Jie Yang 041; Elsa D. Angelini; Pallavi P. Balte; Eric A. Hoffman; John H. M. Austin; Benjamin M. Smith; R. Graham Barr; Andrew F. Laine (IEEE Trans. Medical Imaging, 2021)

Single Volume Lung Biomechanics from Chest Computed Tomography Using a Mode Preserving Generative Adversarial Network. - Muhammad F. A. Chaudhary; Sarah E. Gerard; Di Wang; Gary E. Christensen; Christopher B. Cooper; Joyce D. Schroeder; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2022)

CT-based segmentation of pectoral muscle using deep learning and association of computed metrics with aging and sex. - Indra Narayan Dutta; Syed Ahmed Nadeem; Alejandro P. Comellas; Eric A. Hoffman; Punam K. Saha (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2022)

CT-based segmentation of thoracic vertebrae using deep learning and computation of the kyphotic angle. - Syed Ahmed Nadeem; Alejandro P. Comellas; Indranil Guha; Elizabeth A. Regan; Eric A. Hoffman; Punam K. Saha (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2022)

Robust Measures of Image-Registration-Derived Lung Biomechanics in SPIROMICS. - Yue Pan; Di Wang; Muhammad F. A. Chaudhary; Wei Shao 008; Sarah E. Gerard; Oguz C. Durumeric; Surya P. Bhatt; R. Graham Barr; Eric A. Hoffman; Joseph M. Reinhardt; Gary E. Christensen (J. Imaging, 2022)

PLOSL: Population learning followed by one shot learning pulmonary image registration using tissue volume preserving and vesselness constraints. - Di Wang; Yue Pan; Oguz C. Durumeric; Joseph M. Reinhardt; Eric A. Hoffman; Joyce D. Schroeder; Gary E. Christensen (Medical Image Anal., 2022)

Multi-View Cnn For Total Lung Volume Inference On Cardiac Computed Tomography. - Artur Wysoczanski; Elsa D. Angelini; Yifei Sun; Benjamin M. Smith; Eric A. Hoffman; Karen Stukovsky; Matthew J. Budoff; Karol E. Watson; John Jeffrey Carr; Elizabeth C. Oelsner; R. Graham Barr; Andrew F. Laine (ISBI, 2023)

Automated detection of ribs in chest CT scans and assessment of changes in their morphology between Total Lung Capacity (TLC) and Residual Volume (RV). - Syed Ahmed Nadeem; Alejandro P. Comellas; Eric A. Hoffman; Punam K. Saha (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2023)

Bridging the Task Barriers: Online Knowledge Distillation Across Tasks for Semi-supervised Mediastinal Segmentation in CT. - Muhammad F. A. Chaudhary; Seyed Soheil Hosseini; R. Graham Barr; Joseph M. Reinhardt; Eric A. Hoffman; Sarah E. Gerard (MLMI@MICCAI (1), 2023)

Unsupervised Airway Tree Clustering with Deep Learning: the Multi-Ethnic Study of Atherosclerosis (Mesa) Lung Study. - Sneha N. Naik; Elsa D. Angelini; R. Graham Barr; Norrina Allen; Alain Bertoni; Eric A. Hoffman; Ani Manichaikul; Jim Pankow; Wendy Post; Yifei Sun; Karol E. Watson; Benjamin M. Smith; et al. (ISBI, 2024)

Robust Quantification of Percent Emphysema on CT Via Domain Attention: The Multi-Ethnic Study of Atherosclerosis (MESA) Lung Study. - Xuzhe Zhang; Elsa D. Angelini; Eric A. Hoffman; Karol E. Watson; Benjamin M. Smith; R. Graham Barr; Andrew F. Laine (ISBI, 2024)

Robust deep labeling of radiological emphysema subtypes using squeeze and excitation convolutional neural networks: The MESA Lung and SPIROMICS Studies. - Artur Wysoczanski; Nabil Ettehadi; Soroush Arabshahi; Yifei Sun; Karen Hinkley Stukovsky; Karol E. Watson; MeiLan K. Han; Erin D. Michos; Alejandro P. Comellas; Eric A. Hoffman; Andrew F. Laine; R. Graham Barr; et al. (CoRR, 2024)

LungViT: Ensembling Cascade of Texture Sensitive Hierarchical Vision Transformers for Cross-Volume Chest CT Image-to-Image Translation. - Muhammad F. A. Chaudhary; Sarah E. Gerard; Gary E. Christensen; Christopher B. Cooper; Joyce D. Schroeder; Eric A. Hoffman; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2024)

Multi-View Transformers for Airway-to-Lung Ratio Inference on Cardiac CT Scans: The C4R Study. - Sneha N. Naik; Elsa D. Angelini; Eric A. Hoffman; Elizabeth C. Oelsner; R. Graham Barr; Benjamin M. Smith; Andrew F. Laine (ISBI, 2025)