IPEP: an in silico tool to examine proteolytic peptides for mass spectrometry. - Dihui Lu; Richard Z. Liu; Victoria Izumi; David A. Fenstermacher; Eric B. Haura; John M. Koomen; Steven Eschrich (Bioinform., 2008)

GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis. - Qian Li 023; Kate Fisher; Wenjun Meng; Bin Fang; Eric A. Welsh; Eric B. Haura; John M. Koomen; Steven A. Eschrich; Brooke L. Fridley; Yian Ann Chen (Bioinform., 2020)

Network models of protein phosphorylation, acetylation, and ubiquitination connect metabolic and cell signaling pathways in lung cancer. - Karen E. Ross; Guolin Zhang; Cuneyt Akcora; Yu Lin; Bin Fang; John M. Koomen; Eric B. Haura; Mark Grimes (PLoS Comput. Biol., 2023)