Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. - Eric Bonnet; Jan Wuyts; Pierre Rouzé; Yves Van de Peer (Bioinform., 2004)

Scalable hardware accelerator for comparing DNA and protein sequences. - Philippe Faes; Bram Minnaert; Mark Christiaens; Eric Bonnet; Yvan Saeys; Dirk Stroobandt; Yves Van de Peer (Infoscale, 2006)

Validating module network learning algorithms using simulated data. - Tom Michoel; Steven Maere; Eric Bonnet; Anagha Joshi; Yvan Saeys; Tim Van den Bulcke; Koenraad Van Leemput; Piet van Remortel; Martin Kuiper; Kathleen Marchal; Yves Van de Peer (BMC Bioinform., 2007)

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. - Eric Bonnet; Ying He; Kenny Billiau; Yves Van de Peer (Bioinform., 2010)

Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data. - Eric Bonnet; Tom Michoel; Yves Van de Peer (Bioinform., 2010)

OCSANA: optimal combinations of interventions from network analysis. - Paola Vera-Licona; Eric Bonnet; Emmanuel Barillot; Andrei Yu. Zinovyev (Bioinform., 2013)

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats. - Eric Bonnet; Laurence Calzone; Daniel Rovera; Gautier Stoll; Emmanuel Barillot; Andrei Yu. Zinovyev (BMC Syst. Biol., 2013)

NaviCell Web Service for network-based data visualization. - Eric Bonnet; Eric Viara; Inna Kuperstein; Laurence Calzone; David P. A. Cohen; Emmanuel Barillot; Andrei Yu. Zinovyev (Nucleic Acids Res., 2015)

Integrative Multi-omics Module Network Inference with Lemon-Tree. - Eric Bonnet; Laurence Calzone; Tom Michoel (PLoS Comput. Biol., 2015)

Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages. - Paul Deveau; Emmanuel Barillot; Valentina Boeva; Andrei Yu. Zinovyev; Eric Bonnet (R J., 2016)

Conceptual and computational framework for logical modelling of biological networks deregulated in diseases. - Arnau Montagud; Pauline Traynard; Loredana Martignetti; Eric Bonnet; Emmanuel Barillot; Andrei Yu. Zinovyev; Laurence Calzone (Briefings Bioinform., 2019)

RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis. - Vidisha Singh; George D. Kalliolias; Marek Ostaszewski; Maëva Veyssiere; Eleftherios Pilalis; Piotr Gawron; Alexander Mazein; Eric Bonnet; Elisabeth Petit-Teixeira; Anna Niarakis (Database J. Biol. Databases Curation, 2020)