Regulatory Element Detection Using a Probabilistic Segmentation Model. - Harmen J. Bussemaker; Hao Li; Eric D. Siggia (ISMB, 2000)

Regulatory element detection using correlation with expression (abstract only). - Harmen J. Bussemaker; Hao Li; Eric D. Siggia (RECOMB, 2001)

Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo. - Nikolaus Rajewsky; Massimo Vergassola; Ulrike Gaul; Eric D. Siggia (BMC Bioinform., 2002)

A probabilistic method to detect regulatory modules. - Saurabh Sinha; Erik van Nimwegen; Eric D. Siggia (ISMB (Supplement of Bioinformatics), 2003)

Conservation of regulatory elements between two species of Drosophila. - Eldon Emberly; Nikolaus Rajewsky; Eric D. Siggia (BMC Bioinform., 2003)

Genome wide identification of regulatory motifs in Bacillus subtilis. - Michael M. Mwangi; Eric D. Siggia (BMC Bioinform., 2003)

PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information. - Rahul Siddharthan; Erik van Nimwegen; Eric D. Siggia (Regulatory Genomics, 2004)

Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila. - Saurabh Sinha; Mark D. Schroeder; Ulrich Unnerstall; Ulrike Gaul; Eric D. Siggia (BMC Bioinform., 2004)

PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny. - Rahul Siddharthan; Eric D. Siggia; Erik van Nimwegen (PLoS Comput. Biol., 2005)

Stubb: a program for discovery and analysis of cis-regulatory modules. - Saurabh Sinha; Yupu Liang; Eric D. Siggia (Nucleic Acids Res., 2006)

Adaptive Temperature Compensation in Circadian Oscillations. - Paul François; Nicolas Despierre; Eric D. Siggia (PLoS Comput. Biol., 2012)