Factor Xa: Simulation studies with an eye to inhibitor design. - Xavier Daura; Eric E. J. Haaksma; Wilfred F. van Gunsteren (J. Comput. Aided Mol. Des., 2000)

Computer based screening of compound databases: 1. Preselection of benzamidine-based thrombin inhibitors. - Thomas Fox; Eric E. J. Haaksma (J. Comput. Aided Mol. Des., 2000)

Delineation of Agonist Binding to the Human Histamine H4 Receptor Using Mutational Analysis, Homology Modeling, and ab Initio Calculations. - Aldo Jongejan; Herman D. Lim; Rogier A. Smits; Iwan J. P. de Esch; Eric E. J. Haaksma; Rob Leurs (J. Chem. Inf. Model., 2008)

Combinatorial Consensus Scoring for Ligand-Based Virtual Fragment Screening: A Comparative Case Study for Serotonin 5-HT3A, Histamine H1, and Histamine H4 Receptors. - Sabine Schultes; Albert J. Kooistra; Henry F. Vischer; Saskia Nijmeijer; Eric E. J. Haaksma; Rob Leurs; Iwan J. P. de Esch; Chris de Graaf (J. Chem. Inf. Model., 2015)