The MidasPlus molecular modeling system. - Thomas E. Ferrin; Conrad C. Huang; Gregory S. Couch; Eric F. Pettersen; Robert Langridge (CHI, 1992)

UCSF Chimera - A visualization system for exploratory research and analysis. - Eric F. Pettersen; Thomas D. Goddard; Conrad C. Huang; Gregory S. Couch; Daniel M. Greenblatt; Elaine C. Meng; Thomas E. Ferrin (J. Comput. Chem., 2004)

Tools for integrated sequence-structure analysis with UCSF Chimera. - Elaine C. Meng; Eric F. Pettersen; Gregory S. Couch; Conrad C. Huang; Thomas E. Ferrin (BMC Bioinform., 2006)

ModBase, a database of annotated comparative protein structure models, and associated resources. - Ursula Pieper 001; Benjamin M. Webb; David T. Barkan; Dina Schneidman-Duhovny; Avner Schlessinger; Hannes Braberg; Zheng Yang; Elaine C. Meng; Eric F. Pettersen; Conrad C. Huang; Ruchira S. Datta; Parthasarathy Sampathkumar; et al. (Nucleic Acids Res., 2011)

Enhancing UCSF Chimera through web services. - Conrad C. Huang; Elaine C. Meng; John H. Morris; Eric F. Pettersen; Thomas E. Ferrin (Nucleic Acids Res., 2014)