Semantically-based text authoring and the concurrent documentation of experimental protocols. - Caroline Brun; Marc Dymetman; Eric Fanchon; Stanislas Lhomme; Sylvain Pogodalla (ACM Symposium on Document Engineering, 2003)

Controlled Authoring of Biological Experiment Reports. - Caroline Brun; Marc Dymetman; Eric Fanchon; Stanislas Lhomme (EACL, 2003)

Modeling the Molecular Network Controlling Adhesion Between Human Endothelial Cells: Inference and Simulation Using Constraint Logic Programming. - Eric Fanchon; Fabien Corblin; Laurent Trilling; Bastien Hermant; Danielle Gulino (CMSB, 2004)

Modélisation de réseaux biologiques discrets en programmation logique par contraintes. - Fabien Corblin; Eric Fanchon; Laurent Trilling (Tech. Sci. Informatiques, 2007)

A declarative constraint-based method for analyzing discrete genetic regulatory networks. - Fabien Corblin; Sébastien Tripodi; Eric Fanchon; Delphine Ropers; Laurent Trilling (Biosyst., 2009)

Applications of a formal approach to decipher discrete genetic networks. - Fabien Corblin; Eric Fanchon; Laurent Trilling (BMC Bioinform., 2010)

Determination, Optimization and Taxonomy of Regulatory Networks: The Example of Arabidopsis thaliana Flower Morphogenesis. - Nicolas Glade; Adrien Elena; Fabien Corblin; Eric Fanchon; Jacques Demongeot; Hedi Ben Amor (AINA Workshops, 2011)

Combinatorics on update digraphs in Boolean networks. - Julio Aracena; Eric Fanchon; Marco Montalva; Mathilde Noual (Discret. Appl. Math., 2011)

Computing with bacterial constituents, cells and populations: from bioputing to bactoputing. - Vic Norris; Abdallah Zemirline; Patrick Amar; Jean Nicolas Audinot; Pascal Ballet; Eshel Ben-Jacob; Gilles Bernot; Guillaume Beslon; Armelle Cabin; Eric Fanchon; Jean-Louis Giavitto; Nicolas Glade; et al. (Theory Biosci., 2011)

Automatic Inference of Regulatory and Dynamical Properties from Incomplete Gene Interaction and Expression Data. - Fabien Corblin; Eric Fanchon; Laurent Trilling; Claudine Chaouiya; Denis Thieffry (IPCAT, 2012)

A Model of the Cellular Iron Homeostasis Network Using Semi-Formal Methods for Parameter Space Exploration - Nicolas Mobilia; Alexandre Donzé; Jean Marc Moulis; Eric Fanchon (HSB, 2012)

Producing a Set of Models for the Iron Homeostasis Network. - Nicolas Mobilia; Alexandre Donzé; Jean Marc Moulis; Eric Fanchon (HSB, 2013)

On the number of update digraphs and its relation with the feedback arc sets and tournaments. - Julio Aracena; Jacques Demongeot; Eric Fanchon; Marco Montalva (Discret. Appl. Math., 2013)

Exploiting the Eigenstructure of Linear Systems to Speed up Reachability Computations. - Alexandre Rocca; Thao Dang 001; Eric Fanchon (HSB, 2014)

Logical Modeling and Analysis of Regulatory Genetic Networks in a Non Monotonic Framework. - Nicolas Mobilia; Alexandre Rocca; Samuel Chorlton; Eric Fanchon; Laurent Trilling (IWBBIO (1), 2015)

Application of the Reachability Analysis for the Iron Homeostasis Study. - Alexandre Rocca; Thao Dang 001; Eric Fanchon; Jean Marc Moulis (HSB, 2016)

HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data. - Carles Foguet; Silvia Marin; Vitaly A. Selivanov; Eric Fanchon; Wai-Nang Paul Lee; Joan J. Guinovart; Pedro de Atauri; Marta Cascante (PLoS Comput. Biol., 2016)

Reduction and Fixed Points of Boolean Networks and Linear Network Coding Solvability. - Maximilien Gadouleau; Adrien Richard; Eric Fanchon (IEEE Trans. Inf. Theory, 2016)

Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach. - Igor Marín de Mas; Eric Fanchon; Balázs Papp; Susana G. Kalko; Josep Roca; Marta Cascante (Bioinform., 2017)

Occupation measure methods for modelling and analysis of biological hybrid automata. - Thao Dang 001; Eric Fanchon; Marcelo Forets; Victor Magron; Alexandre Rocca (CoRR, 2017)

Occupation measure methods for modelling and analysis of biological hybrid systems. - Alexandre Rocca; Marcelo Forets; Victor Magron; Eric Fanchon; Thao Dang 001 (ADHS, 2018)

Set-Based Analysis for Biological Modeling. - Thao Dang 001; Tommaso Dreossi; Eric Fanchon; Oded Maler; Carla Piazza; Alexandre Rocca (Automated Reasoning for Systems Biology and Medicine, 2019)

Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells. - Kapil Newar; Amith Zafal Abdulla; Hossein Salari; Eric Fanchon; Daniel Jost 002 (PLoS Comput. Biol., 2022)