The Sea Urchin Endomesoderm Gene Regulatory Network, an Encoded Logic Map for Early Development. - Eric H. Davidson (CSB, 2003)

Logic Functions of the Genomic Cis-regulatory Code. - Eric H. Davidson; Sorin Istrail (UC, 2005)

Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison. - C. Titus Brown; Yuan Xie 003; Eric H. Davidson; R. Andrew Cameron (BMC Bioinform., 2005)

SpBase: the sea urchin genome database and web site. - R. Andrew Cameron; Manoj Samanta; Autumn Yuan; Dong He; Eric H. Davidson (Nucleic Acids Res., 2009)

A New Software Package for Predictive Gene Regulatory Network Modeling and Redesign. - Emmanuel Faure; Isabelle S. Peter; Eric H. Davidson (J. Comput. Biol., 2013)