Sizing Up Allometric Scaling Theory. - Van M. Savage; Eric J. Deeds; Walter Fontana (PLoS Comput. Biol., 2008)

Structural Properties of Non-Traditional Drug Targets Present New Challenges for Virtual Screening. - Ragul Gowthaman; Eric J. Deeds; John Karanicolas (J. Chem. Inf. Model., 2013)

Machines vs. Ensembles: Effective MAPK Signaling through Heterogeneous Sets of Protein Complexes. - Ryan Suderman; Eric J. Deeds (PLoS Comput. Biol., 2013)

Mathematical Model for Length Control by the Timing of Substrate Switching in the Type III Secretion System. - Maulik K. Nariya; Johnny Israeli; Jack J. Shi; Eric J. Deeds (PLoS Comput. Biol., 2016)

Crosstalk and ultrasensitivity in protein degradation pathways. - Abhishek Mallela; Maulik K. Nariya; Eric J. Deeds (PLoS Comput. Biol., 2020)

Novel metrics reveal new structure and unappreciated heterogeneity in Caenorhabditis elegans development. - Gunalan Natesan; Timothy Hamilton; Eric J. Deeds; Pavak K. Shah (PLoS Comput. Biol., 2023)

Binomial models uncover biological variation during feature selection of droplet-based single-cell RNA sequencing. - Breanne Sparta; Timothy Hamilton; Gunalan Natesan; Samuel D. Aragones; Eric J. Deeds (PLoS Comput. Biol., 2024)