SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data. - Haley J. Abel; Eric J. Duncavage; Nils Becker; Jon R. Armstrong; Vincent J. Magrini; John D. Pfeifer (Bioinform., 2010)

Bam-readcount - rapid generation of basepair-resolution sequence metrics. - Ajay Khanna; David E. Larson; Srivatsan Sridhar; Matthew Mosior; Travis E. Abbott; Susanna Kiwala; Timothy J. Ley; Eric J. Duncavage; Matthew J. Walter; Jason R. Walker; Obi L. Griffith; Malachi Griffith; et al. (J. Open Source Softw., 2022)