Multi-Agent Systems for Biomedical Simulation: Modeling Vascularization of Porous Scaffolds. - Hamidreza Mehdizadeh; Arsun Artel; Eric M. Brey; Ali Cinar (PRIMA, 2011)

Agent-based modeling of osteogenic differentiation of mesenchymal stem cells in porous biomaterials. - Elif S. Bayrak; Hamidreza Mehdizadeh; Banu Akar; Sami I. Somo; Eric M. Brey; Ali Cinar (EMBC, 2014)

Enhanced Viability of Endothelial Colony Forming Cells in Fibrin Microbeads for Sensor Vascularization. - Jarel K. Gandhi; Lada Zivkovic; John P. Fisher; Mervin C. Yoder; Eric M. Brey (Sensors, 2015)

Active inference for dynamic Bayesian networks with an application to tissue engineering. - Caner Komurlu; Jinjian Shao; Banu Akar; Elif S. Bayrak; Eric M. Brey; Ali Cinar; Mustafa Bilgic 001 (Knowl. Inf. Syst., 2017)

cytoNet: Spatiotemporal network analysis of cell communities. - Arun S. Mahadevan; Byron L. Long; Chenyue W. Hu; David T. Ryan; Nicolas E. Grandel; George L. Britton; Marisol Bustos; Maria A. Gonzalez Porras; Katerina Stojkova; Andrew Ligeralde; Hyeonwi Son; John Shannonhouse; et al. (PLoS Comput. Biol., 2022)