Fundamentals of massive automatic pairwise alignments of protein sequences: theoretical significance of Z-value statistics. - Olivier Bastien; Jean-Christophe Aude; Sylvaine Roy; Eric Maréchal (Bioinform., 2004)

A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities. - Olivier Bastien; Philippe Ortet; Sylvaine Roy; Eric Maréchal (BMC Bioinform., 2005)

Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space? - L.-M. Birkholtz; Olivier Bastien; Gordon Wells; D. Grando; F. Joubert; Vinod Kasam; Marc Zimmermann 001; Philippe Ortet; Nicolas Jacq; Sylvaine Roy; Martin Hofmann-Apitius; Vincent Breton; et al. (CoRR, 2006)

The configuration space of homologous proteins: A theoretical and practical framework to reduce the diversity of the protein sequence space after massive all-by-all sequence comparisons. - Olivier Bastien; Philippe Ortet; Sylvaine Roy; Eric Maréchal (Future Gener. Comput. Syst., 2007)

Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment scores. - Olivier Bastien; Eric Maréchal (BMC Bioinform., 2008)

Detection of new protein domains using co-occurrence: application to Plasmodium falciparum. - Nicolas Terrapon; Olivier Gascuel; Eric Maréchal; Laurent Bréhélin (Bioinform., 2009)

Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum. - Nicolas Terrapon; Olivier Gascuel; Eric Maréchal; Laurent Bréhélin (BMC Bioinform., 2012)