Structural Properties of the Caenorhabditis elegans Neuronal Network. - Lav R. Varshney; Beth L. Chen; Eric Paniagua; David H. Hall; Dmitri B. Chklovskii (PLoS Comput. Biol., 2011)

TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets. - Ying Jin; Oliver H. Tam; Eric Paniagua; Molly Hammell (Bioinform., 2015)

Introducing PathQuery, Google's Graph Query Language. - Jesse Weaver; Eric Paniagua; Tushar Agarwal; Nicholas Guy; Alexandre Mattos (CoRR, 2021)