I-TASSER gateway: A protein structure and function prediction server powered by XSEDE. - Wei Zheng 013; Chengxin Zhang; Eric W. Bell; Yang Zhang 040 (Future Gener. Comput. Syst., 2019)

DockRMSD: an open-source tool for atom mapping and RMSD calculation of symmetric molecules through graph isomorphism. - Eric W. Bell; Yang Zhang 040 (J. Cheminformatics, 2019)

EDock: blind protein-ligand docking by replica-exchange monte carlo simulation. - Wenyi Zhang 003; Eric W. Bell; Minghao Yin; Yang Zhang 040 (J. Cheminformatics, 2020)

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks. - Yang Li 107; Chengxin Zhang; Eric W. Bell; Wei Zheng 013; Xiaogen Zhou; Dong-Jun Yu; Yang Zhang 040 (PLoS Comput. Biol., 2021)

FakeRotLib: Expedient Noncanonical Amino Acid Parametrization in Rosetta. - Eric W. Bell; Benjamin P. Brown; Jens Meiler (J. Chem. Inf. Model., 2025)