Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins. - Anne E. Counterman Burba; Ursula Lehnert; Eric Z. Yu; Mark Gerstein (Bioinform., 2006)

The Database of Macromolecular Motions: new features added at the decade mark. - Samuel Flores; Nathaniel Echols; Duncan Milburn; Brandon Hespenheide; Kevin Keating; Jason Lu; Stephen Wells; Eric Z. Yu; Michael Thorpe; Mark Gerstein (Nucleic Acids Res., 2006)

PARE: A tool for comparing protein abundance and mRNA expression data. - Eric Z. Yu; Anne E. Counterman Burba; Mark Gerstein (BMC Bioinform., 2007)