Normalization and experimental design for ChIP-chip data. - Shouyong Peng; Artyom A. Alekseyenko; Erica Larschan; Mitzi I. Kuroda; Peter J. Park (BMC Bioinform., 2007)

Comparative analysis of metazoan chromatin organization Open. - Joshua Wing Kei Ho; Youngsook L. Jung; Tao Liu 022; Burak Han Alver; Soohyun Lee; Kohta Ikegami; Kyung-Ah Sohn; Aki Minoda; Michael Y. Tolstorukov; Alex Appert; Stephen C. J. Parker; Tingting Gu; et al. (Nat., 2014)

TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data. - Ashley Mae Conard; Nathaniel Goodman; Yanhui Hu; Norbert Perrimon; Ritambhara Singh; Charles Lawrence; Erica Larschan (Nucleic Acids Res., 2021)

Integrating Long-Range Regulatory Interactions to Predict Gene Expression Using Graph Convolutional Networks. - Jeremy Bigness; Xavier Loinaz; Shalin Patel; Erica Larschan; Ritambhara Singh (J. Comput. Biol., 2022)

scNODE : generative model for temporal single cell transcriptomic data prediction. - Jiaqi Zhang; Erica Larschan; Jeremy Bigness; Ritambhara Singh (Bioinform., 2024)