Simple Folding Model for HP Lattice Proteins. - Erich Bornberg-Bauer (German Conference on Bioinformatics - Selected Papers, 1996)

A Simple Folding Model for HP-type Lattice Proteins. - Erich Bornberg-Bauer (German Conference on Bioinformatics, 1996)

Chain growth algorithms for HP-type lattice proteins. - Erich Bornberg-Bauer (RECOMB, 1997)

Computational approaches to identify Leucine Zippers. - Erich Bornberg-Bauer (German Conference on Bioinformatics, 1998)

Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets. - Rolf Backofen; Sebastian Will; Erich Bornberg-Bauer (Bioinform., 1999)

WWW access to the SYSTERS protein sequence cluster set. - Antje Krause; Pierre Nicodème; Erich Bornberg-Bauer; Marc Rehmsmeier; Martin Vingron (Bioinform., 1999)

BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks. - Marite Sirava; T. Schäfer; Markus Eiglsperger; Michael Kaufmann 001; Oliver Kohlbacher; Erich Bornberg-Bauer; Hans-Peter Lenhof (ECCB, 2002)

Conceptual data modelling for bioinformatics. - Erich Bornberg-Bauer; Norman W. Paton (Briefings Bioinform., 2002)

TreeWiz: interactive exploration of huge trees. - Ursula Rost; Erich Bornberg-Bauer (Bioinform., 2002)

DoMosaic - Analysis of the Mosaic-like Domain Arrangements in Proteins. - David T. Gerrard; Erich Bornberg-Bauer (Informatica (Slovenia), 2003)

CADRE: the Central Aspergillus Data REpository. - J. E. Mabey; M. J. Anderson; Peter F. Giles; Crispin J. Miller; Terri K. Attwood; Norman W. Paton; Erich Bornberg-Bauer; G. D. Robson; Stephen G. Oliver; David W. Denning (Nucleic Acids Res., 2004)

Rapid motif-based prediction of circular permutations in multi-domain proteins. - January 3rd Weiner; Geraint Thomas; Erich Bornberg-Bauer (Bioinform., 2005)

Identifying protein domain insertions in large databases. - Tobias Lohe; January 3rd Weiner; Erich Bornberg-Bauer (Informatiktage, 2007)

Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN). - Francois Beaussart; January 3rd Weiner; Erich Bornberg-Bauer (Bioinform., 2007)

A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network. - Grigoris D. Amoutzias; Elgar Pichler; Nina Mian; David De Graaf; Anastasia Imsiridou; Marc Robinson-Rechavi; Erich Bornberg-Bauer; David L. Robertson; Stephen G. Oliver (BMC Syst. Biol., 2007)

Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs. - Lothar Wissler; Emanuela Dattolo; Andrew D. Moore; Thorsten B. Reusch; Jeanine L. Olsen; M. Migliaccio; Erich Bornberg-Bauer; Gabriele Procaccini (Database J. Biol. Databases Curation, 2009)

Evolutionary Dynamics on Protein Bi-stability Landscapes can Potentially Resolve Adaptive Conflicts. - Tobias Sikosek; Erich Bornberg-Bauer; Hue Sun Chan (PLoS Comput. Biol., 2012)

Protein family analysis at the domain-level. - Nicolas Terrapon; Andrew D. Moore; Erich Bornberg-Bauer (GCB, 2014)

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins. - Andrew D. Moore; Andreas Held; Nicolas Terrapon; January 3rd Weiner; Erich Bornberg-Bauer (Bioinform., 2014)

Rapid similarity search of proteins using alignments of domain arrangements. - Nicolas Terrapon; January 3rd Weiner; Sonja Grath; Andrew D. Moore; Erich Bornberg-Bauer (Bioinform., 2014)

Domain similarity based orthology detection. - Tristan Bitard-Feildel; Carsten Kemena; Jenny M. Greenwood; Erich Bornberg-Bauer (BMC Bioinform., 2015)

MDAT- Aligning multiple domain arrangements. - Carsten Kemena; Tristan Feildel; Erich Bornberg-Bauer (BMC Bioinform., 2015)

DOGMA: domain-based transcriptome and proteome quality assessment. - Elias Dohmen; Lukas P. M. Kremer; Erich Bornberg-Bauer; Carsten Kemena (Bioinform., 2016)

DOGMA: a web server for proteome and transcriptome quality assessment. - Carsten Kemena; Elias Dohmen; Erich Bornberg-Bauer (Nucleic Acids Res., 2019)