MuTrack: a genome analysis system for large-scale mutagenesis in the mouse. - Erich J. Baker; Leslie Galloway; Barbara Jackson; Denise Schmoyer; Jay Snoddy (BMC Bioinform., 2004)

NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks. - Erich J. Baker; Guan Ning Lin; Huadong Liu; Ravi Kosuri (Source Code Biol. Medicine, 2007)

On Bipartite Graph Decomposition in the Presence of Noise, with Applications to Biological Data Clustering. - Charles A. Phillips; Jeremy J. Jay; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (CTW, 2012)

GeneWeaver: a web-based system for integrative functional genomics. - Erich J. Baker; Jeremy J. Jay; Jason A. Bubier; Michael A. Langston; Elissa J. Chesler (Nucleic Acids Res., 2012)

A Context-Driven Gene Prioritization Method for Web-Based Functional Genomics. - Jeremy J. Jay; Erich J. Baker; Elissa J. Chesler (ISBRA, 2013)

Algorithmic tools for tripartite data analysis. - Charles A. Phillips; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (BMC Bioinform., 2014)

On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types. - Yun Zhang 013; Charles A. Phillips; Gary L. Rogers; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (BMC Bioinform., 2014)

Scalable multipartite subgraph enumeration for integrative analysis of heterogeneous experimental functional genomics data. - Charles A. Phillips; Kai Wang; Jason A. Bubier; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (BCB, 2015)

PredSTP: a highly accurate SVM based model to predict sequential cystine stabilized peptides. - S. M. Ashiqul Islam; Tanvir Sajed; Christopher Kearney; Erich J. Baker (BMC Bioinform., 2015)

GeneWeaver: data driven alignment of cross-species genomics in biology and disease. - Erich J. Baker; Jason A. Bubier; Timothy Reynolds; Michael A. Langston; Elissa J. Chesler (Nucleic Acids Res., 2016)

Protein Classification using Modified N-Gram and Skip-Gram Models: Extended Abstract. - S. M. Ashiqul Islam; Christopher Michel Kearney; Ankan Choudhury; Erich J. Baker (BCB, 2017)

CSPred: A machine-learning-based compound model to identify the functional activities of biologically-stable toxins. - S. M. Ashiqul Islam; Christopher Michel Kearney; Erich J. Baker (BIBM, 2017)

On using cached results to enumerate maximal k-cliques in GeneWeaver. - Qi Yang; Greg Speegle; Erich J. Baker (ICNC-FSKD, 2017)

Protein classification using modified n-grams and skip-grams. - S. M. Ashiqul Islam; Benjamin J. Heil; Christopher Michel Kearney; Erich J. Baker (Bioinform., 2018)

On Finding and Enumerating Maximal and Maximum k-Partite Cliques in k-Partite Graphs. - Charles A. Phillips; Kai Wang; Erich J. Baker; Jason A. Bubier; Elissa J. Chesler; Michael A. Langston (Algorithms, 2019)

Curating gene sets: challenges and opportunities for integrative analysis. - Jason A. Bubier; David P. Hill; Gaurab Mukherjee; Timothy Reynolds; Erich J. Baker; Alexander Berger; Jake Emerson; Judith A. Blake; Elissa J. Chesler (Database J. Biol. Databases Curation, 2019)

Time for a Drink? A Mathematical Model of Non-human Primate Alcohol Consumption. - Sharon Moore; Ami Radunskaya; Elizabeth Zollinger; Kathleen A. Grant; Steven Gonzales; Erich J. Baker (Frontiers Appl. Math. Stat., 2019)

A Fine-Grained Video Traffic Control Mechanism in Software-Defined Networks. - Jun Huang 002; Qiang Duan; Cong-Cong Xing; Bo Gu; Guodong Wang 002; Sherali Zeadally; Erich J. Baker (IEEE Trans. Netw. Serv. Manag., 2022)

Image processing approach provides robust feature extraction for classification with small sample sizes. - Alibek Zhakubayev; Thomas Andersen; Annie Vesterby; Lene Warner Thorup Boel; Kathleen A. Grant; Urszula Iwaniec; Russell Turner; Erich J. Baker; Mary Lauren Benton (ICISDM, 2023)