JSim, an open-source modeling system for data analysis. - Erik Butterworth; Bartholomew Jardine; Gary M. Raymond; Maxwell Lewis Neal; James B. Bassingthwaighte (F1000Research, 2013)

SBML and CellML translation in Antimony and JSim. - Lucian P. Smith; Erik Butterworth; James B. Bassingthwaighte; Herbert M. Sauro (Bioinform., 2014)