Event Extraction from Trimmed Dependency Graphs. - Ekaterina Buyko; Erik Faessler; Joachim Wermter; Udo Hahn (BioNLP@HLT-NAACL (Shared Task), 2009)

A Proposal for a Configurable Silver Standard. - Udo Hahn; Katrin Tomanek; Elena Beisswanger; Erik Faessler (Linguistic Annotation Workshop, 2010)

Syntactic Simplification and Semantic Enrichment - Trimming Dependency Graphs for Event Extraction. - Ekaterina Buyko; Erik Faessler; Joachim Wermter; Udo Hahn (Comput. Intell., 2011)

Active Learning-Based Corpus Annotation - The PathoJen Experience. - Udo Hahn; Elena Beisswanger; Ekaterina Buyko; Erik Faessler (AMIA, 2012)

Iterative Refinement and Quality Checking of Annotation Guidelines - How to Deal Effectively with Semantically Sloppy Named Entity Types, such as Pathological Phenomena. - Udo Hahn; Elena Beisswanger; Ekaterina Buyko; Erik Faessler; Jenny Traumüller; Susann Schröder; Kerstin Hornbostel (LREC, 2012)

Disclose Models, Hide the Data - How to Make Use of Confidential Corpora without Seeing Sensitive Raw Data. - Erik Faessler; Johannes Hellrich; Udo Hahn (LREC, 2014)

Sharing Models and Tools for Processing German Clinical Texts. - Johannes Hellrich; Franz Matthies; Erik Faessler; Udo Hahn (MIE, 2015)

Selecting and Tailoring Ontologies with JOYCE. - Erik Faessler; Friederike Klan; Alsayed Algergawy; Birgitta König-Ries; Udo Hahn (EKAW (Satellite Events), 2016)

UIMA-Based JCoRe 2.0 Goes GitHub and Maven Central ― State-of-the-Art Software Resource Engineering and Distribution of NLP Pipelines. - Udo Hahn; Franz Matthies; Erik Faessler; Johannes Hellrich (LREC, 2016)

Semedico: A Comprehensive Semantic Search Engine for the Life Sciences. - Erik Faessler; Udo Hahn (ACL (System Demonstrations), 2017)

Integrated Semantic Search on Structured and Unstructured Data in the ADOnIS System. - Friederike Klan; Erik Faessler; Alsayed Algergawy; Birgitta König-Ries; Udo Hahn (S4BioDiv@ISWC, 2017)

Annotation Data Management with JeDIS. - Erik Faessler; Udo Hahn (DocEng, 2018)

HPI-DHC at TREC 2018 Precision Medicine Track. - Michel Oleynik; Erik Faessler; Ariane Morassi Sasso; Arpita Kappattanavar; Benjamin Bergner; Harry Freitas Da Cruz; Jan-Philipp Sachs; Suparno Datta; Erwin P. Böttinger (TREC, 2018)

JULIE Lab & Med Uni Graz @ TREC 2019 Precision Medicine Track. - Erik Faessler; Udo Hahn; Michel Oleynik (TREC, 2019)

ProGene - A Large-scale, High-Quality Protein-Gene Annotated Benchmark Corpus. - Erik Faessler; Luise Modersohn; Christina Lohr; Udo Hahn (LREC, 2020)

What Makes a Top-Performing Precision Medicine Search Engine?: Tracing Main System Features in a Systematic Way. - Erik Faessler; Michel Oleynik; Udo Hahn (SIGIR, 2020)

GePI: large-scale text mining, customized retrieval and flexible filtering of gene/protein interactions. - Erik Faessler; Udo Hahn; Sascha Schäuble (Nucleic Acids Res., 2023)