Approaching the taxonomic affiliation of unidentified sequences in public databases - an example from the mycorrhizal fungi. - R. Henrik Nilsson; Erik Kristiansson; Martin Ryberg; Karl-Henrik Larsson (BMC Bioinform., 2005)

Weighted analysis of general microarray experiments. - Anders Sjögren; Erik Kristiansson; Mats Rudemo; Olle Nerman (BMC Bioinform., 2007)

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. - Erik Kristiansson; Philip Hugenholtz; Daniel Dalevi (Bioinform., 2009)

Predicting functional upstream open reading frames in Saccharomyces cerevisiae. - Selpi; Christopher H. Bryant; Graham J. L. Kemp; Janeli Sarv; Erik Kristiansson; Per Sunnerhagen (BMC Bioinform., 2009)

A software pipeline for processing and identification of fungal ITS sequences. - R. Henrik Nilsson; Gunilla Bok; Martin Ryberg; Erik Kristiansson; Nils Hallenberg (Source Code Biol. Medicine, 2009)

A novel method for cross-species gene expression analysis. - Erik Kristiansson; Tobias Österlund; Lina Gunnarsson; Gabriella Arne; D. G. Joakim Larsson; Olle Nerman (BMC Bioinform., 2013)

BacMet: antibacterial biocide and metal resistance genes database. - Chandan Pal; Johan Bengtsson-Palme; Christopher Rensing; Erik Kristiansson; D. G. Joakim Larsson (Nucleic Acids Res., 2014)

HattCI: Fast and Accurate attC site Identification Using Hidden Markov Models. - Mariana Buongermino Pereira; Mikael Wallroth; Erik Kristiansson; Marina Axelson-Fisk (J. Comput. Biol., 2016)

Variability in Metagenomic Count Data and Its Influence on the Identification of Differentially Abundant Genes. - Viktor Jonsson; Tobias Österlund; Olle Nerman; Erik Kristiansson (J. Comput. Biol., 2017)

ECOdrug: a database connecting drugs and conservation of their targets across species. - Bas Verbruggen; Lina Gunnarsson; Erik Kristiansson; Tobias Österlund; Stewart F. Owen; Jason R. Snape; Charles R. Tyler (Nucleic Acids Res., 2018)

GEnView: a gene-centric, phylogeny-based comparative genomics pipeline for bacterial genomes and plasmids. - Stefan Ebmeyer; Roelof Dirk Coertze; Fanny Berglund; Erik Kristiansson; D. G. Joakim Larsson (Bioinform., 2022)

Optimizing Gene-Based Testing for Antibiotic Resistance Prediction. - David Hagerman; Anna Johnning; Roman Naeem; Fredrik Kahl; Erik Kristiansson; Lennart Svensson (AAAI, 2025)