Routine Multiple Imputation in Statistical Databases. - Stef van Buuren; Erik M. van Mulligen; Jacob P. L. Brand (SSDBM, 1994)

Can data representation and interface demands be reconciled? Approach in ORCA. - Astrid M. van Ginneken; Marcel de Wilde; Erik M. van Mulligen; Henk J. Stam (AMIA, 1997)

Clinical data entry. - Erik M. van Mulligen; Henk J. Stam; Astrid M. van Ginneken (AMIA, 1998)

UMLS-based access to CPR data. - Erik M. van Mulligen (Int. J. Medical Informatics, 1999)

Facilitating networks of information. - Erik M. van Mulligen; Mario Diwersy; Martin Schmidt; Henk Buurman; Barend Mons (AMIA, 2000)

Architecture for Information Mediation. - Erik M. van Mulligen; Barend Mons; Martin Schmidt; Mario Diwersy; Achim Domma (MedInfo, 2001)

Research for research: tools for knowledge discovery and visualization. - Erik M. van Mulligen; C. Christiaan van der Eijk; Jan A. Kors; Bob J. A. Schijvenaars; Barend Mons (AMIA, 2002)

Mining Microarray Datasets Aided by Knowledge Stored in Literature. - Rob Jelier; Guido Jenster; Lambert C. J. Dorssers; Erik M. van Mulligen; Barend Mons; Jan A. Kors (AMIA, 2003)

Using Contextual Queries. - Bob J. A. Schijvenaars; Erik M. van Mulligen; Mario Diwersy; Marc Weeber; C. Christiaan van der Eijk; Rob Jelier; Jan A. Kors; Barend Mons (AMIA, 2003)

Ambiguity of Human Gene Symbols in LocusLink and MEDLINE: Creating an Inventory and a Disambiguation Test Collection. - Marc Weeber; Bob J. A. Schijvenaars; Erik M. van Mulligen; Barend Mons; Rob Jelier; C. Christiaan van der Eijk; Jan A. Kors (AMIA, 2003)

Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification. - Rob Jelier; Martijn J. Schuemie; C. Christiaan van der Eijk; Marc Weeber; Erik M. van Mulligen; Bob J. A. Schijvenaars; Barend Mons; Jan A. Kors (TREC, 2003)

A Topic-Based Browser for Large Online Resources. - Heiner Stuckenschmidt; Anita de Waard; Ravinder Bhogal; Christiaan Fluit; Arjohn Kampman; Jan van Buel; Erik M. van Mulligen; Jeen Broekstra; Ian Crowlesmith; Frank van Harmelen; Tony Scerri (EKAW, 2004)

Contextual Annotation of Web Pages for Interactive Browsing. - Erik M. van Mulligen; Mario Diwersy; Bob J. A. Schijvenaars; Marc Weeber; C. Christiaan van der Eijk; Rob Jelier; Martijn J. Schuemie; Jan A. Kors; Barend Mons (MedInfo, 2004)

The Drug Ontology Project for Elsevier - An RDF Architecture Enabling Thesaurus-Driven Data Integration. - Jeen Broekstra; Christiaan Fluit; Arjohn Kampman; Frank van Harmelen; Heiner Stuckenschmidt; Ravinder Bhogal; Antony Scerri; Anita de Waard; Erik M. van Mulligen (WWW Workshop on Application Design, Development and Implementation Issues in the Semantic Web, 2004)

Distribution of information in biomedical abstracts and full-text publications. - Martijn J. Schuemie; Marc Weeber; Bob J. A. Schijvenaars; Erik M. van Mulligen; C. Christiaan van der Eijk; Rob Jelier; Barend Mons; Jan A. Kors (Bioinform., 2004)

Exploring Large Document Repositories with RDF Technology: The DOPE Project. - Heiner Stuckenschmidt; Frank van Harmelen; Anita de Waard; Tony Scerri; Ravinder Bhogal; Jan van Buel; Ian Crowlesmith; Christiaan Fluit; Arjohn Kampman; Jeen Broekstra; Erik M. van Mulligen (IEEE Intell. Syst., 2004)

Constructing an associative concept space for literature-based discovery. - C. Christiaan van der Eijk; Erik M. van Mulligen; Jan A. Kors; Barend Mons; Jan van den Berg (J. Assoc. Inf. Sci. Technol., 2004)

Towards Mapping-Based Document Retrieval in Heterogeneous Digital Libraries. - Heiner Stuckenschmidt; Wolf Siberski; Erik M. van Mulligen (Semantic Grid, 2005)

TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization. - Bob J. A. Schijvenaars; Martijn J. Schuemie; Erik M. van Mulligen; Marc Weeber; Rob Jelier; Barend Mons; Jan A. Kors; Wessel Kraaij (TREC, 2005)

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes. - Rob Jelier; Guido Jenster; Lambert C. J. Dorssers; C. Christiaan van der Eijk; Erik M. van Mulligen; Barend Mons; Jan A. Kors (Bioinform., 2005)

Thesaurus-based disambiguation of gene symbols. - Bob J. A. Schijvenaars; Barend Mons; Marc Weeber; Martijn J. Schuemie; Erik M. van Mulligen; Hester M. Wain; Jan A. Kors (BMC Bioinform., 2005)

An Online Ontology: WiktionaryZ. - Erik M. van Mulligen; Erik Möller; Peter-Jan Roes; Marc Weeber; Gerard Meijssen; Barend Mons (KR-MED, 2006)

Databases for knowledge discovery: Examples from biomedicine and health care. - Jan H. van Bemmel; Erik M. van Mulligen; Barend Mons; Mark A. van Wijk; Jan A. Kors; Johan van der Lei (Int. J. Medical Informatics, 2006)

SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics. - Dietrich Rebholz-Schuhmann; Graham Cameron; Dominic Clark; Erik M. van Mulligen; Jean-Louis Coatrieux; Eva del Hoyo-Barbolla; Fernando Martín-Sánchez; Luciano Milanesi; Ivan Porro; Francesco Beltrame; Ioannis G. Tollis; Johan van der Lei (BMC Bioinform., 2007)

Medical Informatics and Bioinformatics: A Bibliometric Study. - Jean-Yves Bansard; Dietrich Rebholz-Schuhmann; Graham Cameron; Dominic Clark; Erik M. van Mulligen; Francesco Beltrame; Eva del Hoyo-Barbolla; Fernando Martín-Sánchez; Luciano Milanesi; Ioannis G. Tollis; Johan van der Lei; Jean-Louis Coatrieux (IEEE Trans. Inf. Technol. Biomed., 2007)

BioTop and ChemTop - Top-Domain Ontologies for Biology and Chemistry. - Holger Stenzhorn; Stefan Schulz 001; Elena Beisswanger; Udo Hahn; László van den Hoek; Erik M. van Mulligen (ISWC (Posters & Demos), 2008)

Literature-based concept profiles for gene annotation: The issue of weighting. - Rob Jelier; Martijn J. Schuemie; Peter-Jan Roes; Erik M. van Mulligen; Jan A. Kors (Int. J. Medical Informatics, 2008)

Model Formulation: Training Multidisciplinary Biomedical Informatics Students: Three Years of Experience. - Erik M. van Mulligen; Montserrat Cases; Kristina M. Hettne; Eva Molero; Marc Weeber; Kevin A. Robertson; Baldomero Oliva; Guillermo de la Calle; Victor Maojo (J. Am. Medical Informatics Assoc., 2008)

A dictionary to identify small molecules and drugs in free text. - Kristina M. Hettne; Rob H. Stierum; Martijn J. Schuemie; Peter J. M. Hendriksen; Bob J. A. Schijvenaars; Erik M. van Mulligen; Jos Kleinjans; Jan A. Kors (Bioinform., 2009)

Alignment of the UMLS semantic network with BioTop: methodology and assessment. - Stefan Schulz 001; Elena Beisswanger; László van den Hoek; Olivier Bodenreider; Erik M. van Mulligen (Bioinform., 2009)

The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers. - Dietrich Rebholz-Schuhmann; Antonio José Jimeno-Yepes; Erik M. van Mulligen; Ning Kang 002; Jan A. Kors; David Milward; Peter T. Corbett; Ekaterina Buyko; Katrin Tomanek; Elena Beisswanger; Udo Hahn (LREC, 2010)

A Concept Annotation System for Clinical Records. - Ning Kang 002; Rogier Barendse; Zubair Afzal; Bharat Singh; Martijn J. Schuemie; Erik M. van Mulligen; Jan A. Kors (SWAT4LS, 2010)

Rewriting and suppressing UMLS terms for improved biomedical term identification. - Kristina M. Hettne; Erik M. van Mulligen; Martijn J. Schuemie; Bob J. A. Schijvenaars; Jan A. Kors (J. Biomed. Semant., 2010)

Calbc Silver Standard Corpus. - Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Erik M. van Mulligen; Ning Kang 002; Jan A. Kors; David Milward; Peter T. Corbett; Ekaterina Buyko; Elena Beisswanger; Udo Hahn (J. Bioinform. Comput. Biol., 2010)

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining. - Kristina M. Hettne; Antony J. Williams; Erik M. van Mulligen; Jos Kleinjans; Valery Tkachenko; Jan A. Kors (J. Cheminformatics, 2010)

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining (Correction). - Kristina M. Hettne; Antony J. Williams; Erik M. van Mulligen; Jos Kleinjans; Valery Tkachenko; Jan A. Kors (J. Cheminformatics, 2010)

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. - Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Chen Li 011; Senay Kafkas; Ian Lewin; Ning Kang 002; Peter T. Corbett; David Milward; Ekaterina Buyko; Elena Beisswanger; Kerstin Hornbostel; Alexandre Kouznetsov; et al. (J. Biomed. Semant., 2011)

Comparing and combining chunkers of biomedical text. - Ning Kang 002; Erik M. van Mulligen; Jan A. Kors (J. Biomed. Informatics, 2011)

CALBC: Releasing the Final Corpora. - Senay Kafkas; Ian Lewin; David Milward; Erik M. van Mulligen; Jan A. Kors; Udo Hahn; Dietrich Rebholz-Schuhmann (LREC, 2012)

Training text chunkers on a silver standard corpus: can silver replace gold? - Ning Kang 002; Erik M. van Mulligen; Jan A. Kors (BMC Bioinform., 2012)

Using an ensemble system to improve concept extraction from clinical records. - Ning Kang 002; Zubair Afzal; Bharat Singh; Erik M. van Mulligen; Jan A. Kors (J. Biomed. Informatics, 2012)

The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships. - Erik M. van Mulligen; Annie Fourrier-Réglat; David Gurwitz; Mariam Molokhia; Ainhoa Nieto; Gianluca Trifirò; Jan A. Kors; Laura Inés Furlong (J. Biomed. Informatics, 2012)

Automatic Filtering and Substantiation of Drug Safety Signals. - Anna Bauer-Mehren; Erik M. van Mulligen; Paul Avillach; María del Carmen Carrascosa; Ricard García-Serna; Janet Piñero González; Bharat Singh; Pedro Lopes 002; José Luís Oliveira; Gayo Diallo; Ernst Ahlberg Helgee; Scott Boyer; et al. (PLoS Comput. Biol., 2012)

A fast rule-based approach for biomedical event extraction. - Quoc-Chinh Bui; David Campos 001; Erik M. van Mulligen; Jan A. Kors (BioNLP@ACL (Shared Task), 2013)

Creating Multilingual Gold Standard Corpora for Biomedical Concept Recognition. - Jan A. Kors; Simon Clematide; Saber A. Akhondi; Erik M. van Mulligen; Dietrich Rebholz-Schuhmann (CLEF (Working Notes), 2013)

Machine Translation of Bio-Thesauri. - Erik M. van Mulligen; Quoc-Chinh Bui; Jan A. Kors (CLEF (Working Notes), 2013)

Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview. - Dietrich Rebholz-Schuhmann; Simon Clematide; Fabio Rinaldi 001; Senay Kafkas; Erik M. van Mulligen; Quoc-Chinh Bui; Johannes Hellrich; Ian Lewin; David Milward; Michael Poprat; Antonio Jimeno-Yepes; Udo Hahn; et al. (CLEF, 2013)

Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge. - Dietrich Rebholz-Schuhmann; Simon Clematide; Fabio Rinaldi 001; Senay Kafkas; Erik M. van Mulligen; Quoc-Chinh Bui; Johannes Hellrich; Ian Lewin; David Milward; Michael Poprat; Antonio Jimeno-Yepes; Udo Hahn; et al. (CLEF (Working Notes), 2013)

Using rule-based natural language processing to improve disease normalization in biomedical text. - Ning Kang 002; Bharat Singh; Zubair Afzal; Erik M. van Mulligen; Jan A. Kors (J. Am. Medical Informatics Assoc., 2013)

A novel feature-based approach to extract drug-drug interactions from biomedical text. - Quoc-Chinh Bui; Peter M. A. Sloot; Erik M. van Mulligen; Jan A. Kors (Bioinform., 2014)

Knowledge-based extraction of adverse drug events from biomedical text. - Ning Kang 002; Bharat Singh; Quoc-Chinh Bui; Zubair Afzal; Erik M. van Mulligen; Jan A. Kors (BMC Bioinform., 2014)

Explain your data by Concept Profile Analysis Web Services. - Kristina M. Hettne; Reinout van Schouwen; Eleni Mina; Eelke van der Horst; Mark Thompson 002; Rajaram Kaliyaperumal; Barend Mons; Erik M. van Mulligen; Jan A. Kors; Marco Roos (F1000Research, 2014)

Finding potentially new multimorbidity patterns of psychiatric and somatic diseases: exploring the use of literature-based discovery in primary care research. - Rein Vos; Sil Aarts; Erik M. van Mulligen; Job Metsemakers; Martin P. van Boxtel; Frans Verhey; Marjan van den Akker 002 (J. Am. Medical Informatics Assoc., 2014)

SEMCARE - Semantic Data Platform for Healthcare. - Philipp Daumke; Claudia Riede; Thomas Fassbender; Angel Honrado; Markus Kreuzthaler; Pablo López-García; Stefan Schulz 001; Erik M. van Mulligen; Herman van Haagen; Jan A. Kors; Hanney Gonna; Xinkai Wang 002; et al. (AMIA, 2015)

Biomedical Concept Recognition in French Text Using Automatic Translation of English Terms. - Zubair Afzal; Saber A. Akhondi; Herman van Haagen; Erik M. van Mulligen; Jan A. Kors (CLEF (Working Notes), 2015)

Information from Semantic Integration of Texts and Databases. - Erik M. van Mulligen; Wytze Vlietstra; Rein Vos; Jan A. Kors (SWAT4LS, 2015)

A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC. - Jan A. Kors; Simon Clematide; Saber A. Akhondi; Erik M. van Mulligen; Dietrich Rebholz-Schuhmann (J. Am. Medical Informatics Assoc., 2015)

Recognition of chemical entities: combining dictionary-based and grammar-based approaches. - Saber A. Akhondi; Kristina M. Hettne; Eelke van der Horst; Erik M. van Mulligen; Jan A. Kors (J. Cheminformatics, 2015)

Concept Recognition in French Biomedical Text Using Automatic Translation. - Zubair Afzal; Saber A. Akhondi; Herman H. H. B. M. van Haagen; Erik M. van Mulligen; Jan A. Kors (CLEF, 2016)

Erasmus MC at CLEF eHealth 2016: Concept Recognition and Coding in French Texts. - Erik M. van Mulligen; Zubair Afzal; Saber A. Akhondi; Dang Vo; Jan A. Kors (CLEF (Working Notes), 2016)

SEMCARE: Multilingual Semantic Search in Semi-Structured Clinical Data. - Pablo López-García; Markus Kreuzthaler; Stefan Schulz 001; Daniel Scherr; Philipp Daumke; Kornél G. Markó; Jan A. Kors; Erik M. van Mulligen; Xinkai Wang 002; Hanney Gonna; Elijah Behr; Angel Honrado (eHealth, 2016)

Discovering Information from an Integrated Graph Database. - Erik M. van Mulligen; Wytze Vlietstra; Rein Vos; Jan A. Kors (SWAT4LS, 2016)

Chemical entity recognition in patents by combining dictionary-based and statistical approaches. - Saber A. Akhondi; Ewoud Pons; Zubair Afzal; Herman van Haagen; Benedikt F. H. Becker; Kristina M. Hettne; Erik M. van Mulligen; Jan A. Kors (Database J. Biol. Databases Curation, 2016)

Extraction of chemical-induced diseases using prior knowledge and textual information. - Ewoud Pons; Benedikt F. H. Becker; Saber A. Akhondi; Zubair Afzal; Erik M. van Mulligen; Jan A. Kors (Database J. Biol. Databases Curation, 2016)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Mark Thompson 002; Rajaram Kaliyaperumal; et al. (PeerJ Prepr., 2016)

Automated extraction of potential migraine biomarkers using a semantic graph. - Wytze J. Vlietstra; Ronald Zielman; Robin M. van Dongen; Erik A. Schultes; Floris Wiesman; Rein Vos; Erik M. van Mulligen; Jan A. Kors (J. Biomed. Informatics, 2017)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Arnold Kuzniar; Anand K. Gavai; et al. (PeerJ Prepr., 2017)

Using predicate and provenance information from a knowledge graph for drug efficacy screening. - Wytze J. Vlietstra; Rein Vos; Anneke M. Sijbers; Erik M. van Mulligen; Jan A. Kors (J. Biomed. Semant., 2018)

QTLTableMiner++: semantic mining of QTL tables in scientific articles. - Gurnoor Singh; Arnold Kuzniar; Erik M. van Mulligen; Anand K. Gavai; Christian W. Bachem; Richard G. F. Visser; Richard Finkers (BMC Bioinform., 2018)

Using Predicate Information from a Knowledge Graph to Identify Disease Trajectories. - Wytze Vlietstra; Rein Vos; Erik M. van Mulligen; Jan A. Kors (AAAI Spring Symposium: Combining Machine Learning with Knowledge Engineering, 2019)

Identifying disease trajectories with predicate information from a knowledge graph. - Wytze J. Vlietstra; Rein Vos; Marjan van den Akker 002; Erik M. van Mulligen; Jan A. Kors (J. Biomed. Semant., 2020)

Use of unstructured text in prognostic clinical prediction models: a systematic review. - Tom M. Seinen; Egill A. Fridgeirsson; Solomon Ioannou; Daniel Jeannetot; Luis H. John; Jan A. Kors; Aniek F. Markus; Victor Pera; Alexandros Rekkas; Ross D. Williams; Cynthia Yang; Erik M. van Mulligen; et al. (J. Am. Medical Informatics Assoc., 2022)

The added value of text from Dutch general practitioner notes in predictive modeling. - Tom M. Seinen; Jan A. Kors; Erik M. van Mulligen; Egill A. Fridgeirsson; Peter R. Rijnbeek (J. Am. Medical Informatics Assoc., 2023)

Biomedical Entity Linking for Dutch: Fine-tuning a Self-alignment BERT Model on an Automatically Generated Wikipedia Corpus. - Fons Hartendorp; Tom M. Seinen; Erik M. van Mulligen; Suzan Verberne (CoRR, 2024)

Using clinical text to refine unspecific condition codes in Dutch general practitioner EHR data. - Tom M. Seinen; Jan A. Kors; Erik M. van Mulligen; Egill A. Fridgeirsson; Katia M. C. Verhamme; Peter R. Rijnbeek (Int. J. Medical Informatics, 2024)

Annotation-preserving machine translation of English corpora to validate Dutch clinical concept extraction tools. - Tom M. Seinen; Jan A. Kors; Erik M. van Mulligen; Peter R. Rijnbeek (J. Am. Medical Informatics Assoc., 2024)

Mapping between clinical and preclinical terminologies: eTRANSAFE's Rosetta stone approach. - Erik M. van Mulligen; Rowan Parry; Johan van der Lei; Jan A. Kors (J. Biomed. Semant., 2025)