The Homeodomain Resource: sequences, structures and genomic information. - Sharmila Banerjee-Basu; Erik S. Ferlanti; Joseph F. Ryan 003; Andreas D. Baxevanis (Nucleic Acids Res., 1999)

Histone Sequence Database: sequences, structures, post-translational modifications and genetic loci. - Izabela Makalowska; Erik S. Ferlanti; Andreas D. Baxevanis; David Landsman (Nucleic Acids Res., 1999)

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results. - John C. Braisted; Srilatha Kuntumalla; Christine Vogel; Edward M. Marcotte; Alan R. Rodrigues; Rong Wang; Shih-Ting Huang; Erik S. Ferlanti; Alexander I. Saeed; Robert D. Fleischmann; Scott N. Peterson; Rembert Pieper (BMC Bioinform., 2008)

The arabidopsis information portal: an application platform for data discovery. - Matthew R. Hanlon; Matthew Vaughn; Stephen A. Mock; Rion Dooley; Walter Moreira; Joe Stubbs; Christopher Town 002; Jason R. Miller; Vivek Krishnakumar; Erik S. Ferlanti; Eleanor Pence (GCE@SC, 2014)

Araport: an application platform for data discovery. - Matthew R. Hanlon; Matthew Vaughn; Stephen A. Mock; Rion Dooley; Walter Moreira; Joe Stubbs; Christopher Town 002; Jason R. Miller; Vivek Krishnakumar; Erik S. Ferlanti; Eleanor Pence (Concurr. Comput. Pract. Exp., 2015)

Araport: the Arabidopsis Information Portal. - Vivek Krishnakumar; Matthew R. Hanlon; Sergio Contrino; Erik S. Ferlanti; Svetlana Karamycheva; Maria Kim; Benjamin D. Rosen; Chia-Yi Cheng; Walter Moreira; Stephen A. Mock; Joseph Stubbs; Julie M. Sullivan; et al. (Nucleic Acids Res., 2015)

Integrating Jupyter into Research Computing Ecosystems: Challenges and Successes in Architecting JupyterHub for Collaborative Research Computing Ecosystems. - Joe Stubbs; Julia Looney; Marjo Poindexter; Elias Chalhoub; Gregory J. Zynda; Erik S. Ferlanti; Matthew Vaughn; John M. Fonner; Maytal Dahan (PEARC, 2020)

Containerizing Visualization Software: Experiences and Best Practices. - Andrew J. Solis; William J. Allen; Erik S. Ferlanti (PEARC, 2022)

Perspectives and Experiences Supporting Containers for Research Computing at the Texas Advanced Computing Center. - Erik S. Ferlanti; William J. Allen; Ernesto A. B. F. Lima; Yinzhi Wang; John M. Fonner (SC Workshops, 2023)

Scalable and Reproducible Virtual Screening through an API-Integrated Workflow. - Tiffany Huff; Austin Darrow; Joshua Medina; Erik S. Ferlanti; James D. Carson; John M. Fonner; Sal Tijerina; Stanley J. Watowich; William J. Allen (PEARC, 2023)

Human-powered AI Gym: Lessons Learned as the Test and Evaluation Team for the DARPA SHADE Program: Human-powered AI Gym. - Justin Drake; Niall Gaffney; Nathan Dean Freeman; Erik S. Ferlanti; John Fonner (PEARC, 2024)