DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment. - Erik Scott Wright (BMC Bioinform., 2015)

DesignSignatures: a tool for designing primers that yields amplicons with distinct signatures. - Erik Scott Wright; Kalin H. Vetsigian (Bioinform., 2016)

Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R. - Erik Scott Wright (R J., 2016)

AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions. - Deepank R. Korandla; Jacob M. Wozniak; Anaamika Campeau; David J. Gonzalez; Erik Scott Wright (Bioinform., 2020)

Ten simple rules for hitting a home run with your elevator pitch. - Whitney Rachel Morgan; Erik Scott Wright (PLoS Comput. Biol., 2021)

FindNonCoding: rapid and simple detection of non-coding RNAs in genomes. - Erik Scott Wright (Bioinform., 2022)

Sample-efficient identification of high-dimensional antibiotic synergy with a normalized diagonal sampling design. - Jennifer Brennan; Lalit Jain; Sofia Garman; Ann E. Donnelly; Erik Scott Wright; Kevin G. Jamieson (PLoS Comput. Biol., 2022)

Fast and Flexible Search for Homologous Biological Sequences with DECIPHER v3. - Erik Scott Wright (R J., 2025)